Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

74697877 .. 74699289

Gene Structure 1413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAAACGTGTGAAGGCATCTTTCCGGAGATTATTGTTCAAGCAAGGTGGGAGTCGAGCAACTTCAGAATACCCATTTGCTGTTGCTGGCATAAACATATCATTTTTGTTGATTCAATTGCTGGATCTTTGGTCAGAAGATGAAGCTGCTTCTGATGTACTATTCGGTATAGCTTTTGAAATGGTCGATGCTCAGTGGAATGCTATGAATGCATCCTACATGCAGTTTAATGACTTTGGAATCCTGCGAGATCATCTGCAAGCAATGCGAACGCAGTTGGAAAGAGAACCATCTTTAGAAGATATCTTCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko05100 ko05131 map05100 map05131

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

104

Amino Acids

11.97

Weight (kDa)

4.84

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	4 - 78	2.5e-11	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	24
AclWI	GGATC	1 cut(s)	132
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	1 cut(s)	159
AflIII	ACRYGT	1 cut(s)	7
AgsI	TTSAA	3 cut(s)	40, 116, 179
AluBI	AGCT	2 cut(s)	146, 173
AluI	AGCT	2 cut(s)	146, 173
AlwI	GGATC	1 cut(s)	132
Aor13HI	TCCGGA	1 cut(s)	24
ApeKI	GCWGC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	1 cut(s)	298
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmsI	GCATC	3 cut(s)	26, 178, 221
BsaWI	WCCGGW	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	310
Bse3DI	GCAATG	1 cut(s)	270
BseAI	TCCGGA	1 cut(s)	24
BseGI	GGATG	1 cut(s)	212
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	206
BseNI	ACTGG	1 cut(s)	310
BseXI	GCAGC	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	25
BsmI	GAATGC	2 cut(s)	205, 214
Bsp13I	TCCGGA	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	124, 250
BspCNI	CTCAG	1 cut(s)	205
BspEI	TCCGGA	1 cut(s)	24
BspPI	GGATC	1 cut(s)	132
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	310
BssMI	GATC	2 cut(s)	124, 250
BstAPI	GCANNNNNTGC	1 cut(s)	265
BstC8I	GCNNGC	2 cut(s)	88, 261
BstDEI	CTNAG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	212
BstKTI	GATC	2 cut(s)	127, 253
BstMBI	GATC	2 cut(s)	124, 250
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 265
BstNSI	RCATGY	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	212
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	2 cut(s)	88, 261
Csp6I	GTAC	1 cut(s)	158
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	2 cut(s)	146, 173
CviKI_1	RGCY	2 cut(s)	146, 173
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	2 cut(s)	126, 252
DpnII	GATC	2 cut(s)	124, 250
Eco32I	GATATC	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	48
EcoRV	GATATC	1 cut(s)	304
EcoT22I	ATGCAT	1 cut(s)	214
FaeI	CATG	1 cut(s)	223
FaiI	YATR	5 cut(s)	92, 98, 170, 206, 221
FatI	CATG	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
HapII	CCGG	1 cut(s)	25
Hin1II	CATG	1 cut(s)	223
HinfI	GANTC	3 cut(s)	52, 112, 240
HpaII	CCGG	1 cut(s)	25
Hpy188I	TCNGA	3 cut(s)	67, 136, 154
Hpy188III	TCNNGA	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	7
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	3 cut(s)	212, 223, 259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 265
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	1 cut(s)	223
Kpn2I	TCCGGA	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	124, 250
LpnPI	CCDG	4 cut(s)	38, 72, 107, 257
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	3 cut(s)	26, 178, 221
MaeII	ACGT	1 cut(s)	7
MalI	GATC	2 cut(s)	126, 252
MboI	GATC	2 cut(s)	124, 250
MboII	GAAGA	3 cut(s)	149, 298, 311
MfeI	CAATTG	1 cut(s)	116
MflI	RGATCY	1 cut(s)	124
MluCI	AATT	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	1 cut(s)	258
Mph1103I	ATGCAT	1 cut(s)	214
MroI	TCCGGA	1 cut(s)	24
MseI	TTAA	1 cut(s)	228
MspI	CCGG	1 cut(s)	25
MunI	CAATTG	1 cut(s)	116
Mva1269I	GAATGC	2 cut(s)	205, 214
MwoI	GCNNNNNNNGC	2 cut(s)	209, 265
NdeII	GATC	2 cut(s)	124, 250
NlaIII	CATG	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	214
NspI	RCATGY	1 cut(s)	223
PctI	GAATGC	2 cut(s)	205, 214
PfeI	GAWTC	2 cut(s)	112, 240
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	124
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	124, 250
SchI	GAGTC	1 cut(s)	61
SetI	ASST	4 cut(s)	10, 49, 148, 175
SfaNI	GCATC	3 cut(s)	26, 178, 221
Sse9I	AATT	1 cut(s)	116
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	2 cut(s)	55, 186
TasI	AATT	1 cut(s)	116
TatI	WGTACW	1 cut(s)	157
TfiI	GAWTC	2 cut(s)	112, 240
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	200
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	3 cut(s)	17, 156, 221
TspRI	CASTG	1 cut(s)	200
XceI	RCATGY	1 cut(s)	223
Zsp2I	ATGCAT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.