RchiOBHm_Chr2g0159891

Calreticulin-3-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
75962092 .. 75962530
439 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 372 bp
ATGAAATGCAGAGGAATTCAGACATCTAGTGATGCCAAACATTTTGCCATATCTGCAAAGATACCGGAGTTCTCTAACAAGAACAGAACCTTGGTCCTCCAATATTCTGTAAGGTTTGAGCAGGAAATTGAATGCGGTGGGGGTTACATAAAGCTTATGTCTGGATTTGTTAATCAGAAGAAATTCAGTGGGGATACTCCTTACAAACATGCCATCGCTGAACTCGTTTTTCGCCTGAACAACCCCCTCCTCTTTCTTCCTCGTTCTGTCAATTATACTTTCTCAGGTATGTCTTCCTTAATTAAACAATCTATATGTTCAGTAACAATTCTAATTATTGAACTTGAATGGTATATGGTTTTATATAGATAG

Protein Analysis

123

Amino Acids

14.1

Weight (kDa)

9.38

Isoelectric Point (pI)

47.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Calreticulin PF00262 5 - 69 1.8e-13 Calreticulin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 135
AcsI RAATTY 2 cut(s) 15, 182
AgsI TTSAA 3 cut(s) 131, 341, 347
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
ApoI RAATTY 2 cut(s) 15, 182
Asp700I GAANNNNTTC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 94
AvaII GGWCC 1 cut(s) 94
BaeI ACNNNNGTAYC 2 cut(s) 53, 86
BbsI GAAGAC 1 cut(s) 285
BccI CCATC 1 cut(s) 221
BciVI GTATCC 1 cut(s) 187
BfaI CTAG 1 cut(s) 27
BfuI GTATCC 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmsI GCATC 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 297
BseRI GAGGAG 1 cut(s) 239
BsiSI CCGG 1 cut(s) 65
BsmI GAATGC 1 cut(s) 137
BspACI CCGC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 283
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 212
BstV2I GAAGAC 1 cut(s) 285
BsuI GTATCC 1 cut(s) 187
BtgZI GCGATG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 94
CviAII CATG 1 cut(s) 209
CviJI RGCY 1 cut(s) 154
CviKI_1 RGCY 1 cut(s) 154
DdeI CTNAG 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 94
EcoRI GAATTC 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 1 cut(s) 212
FatI CATG 1 cut(s) 208
FspBI CTAG 1 cut(s) 27
HapII CCGG 1 cut(s) 65
Hin1II CATG 1 cut(s) 212
HindIII AAGCTT 1 cut(s) 152
HpaII CCGG 1 cut(s) 65
Hpy188I TCNGA 2 cut(s) 21, 177
Hpy188III TCNNGA 1 cut(s) 162
HpyCH4V TGCA 2 cut(s) 9, 56
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 283
Hsp92II CATG 1 cut(s) 212
LpnPI CCDG 5 cut(s) 78, 107, 147, 248, 270
LweI GCATC 1 cut(s) 22
MaeI CTAG 1 cut(s) 27
MaeIII GTNAC 2 cut(s) 143, 322
MboII GAAGA 3 cut(s) 190, 248, 285
MluCI AATT 7 cut(s) 15, 126, 182, 271, 300, 327, 333
MnlI CCTC 5 cut(s) 5, 107, 257, 260, 270
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 3 cut(s) 171, 299, 303
MspI CCGG 1 cut(s) 65
Mva1269I GAATGC 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 53
NlaIII CATG 1 cut(s) 212
NspI RCATGY 1 cut(s) 212
PacI TTAATTAA 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 1 cut(s) 137
PdmI GAANNNNTTC 1 cut(s) 182
PspPI GGNCC 1 cut(s) 94
SaqAI TTAA 3 cut(s) 171, 299, 303
Sau96I GGNCC 1 cut(s) 94
SetI ASST 4 cut(s) 92, 116, 156, 289
SfaNI GCATC 1 cut(s) 22
SinI GGWCC 1 cut(s) 94
Sse9I AATT 7 cut(s) 15, 126, 182, 271, 300, 327, 333
SsiI CCGC 1 cut(s) 135
SspI AATATT 1 cut(s) 104
SspMI CTAG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 90
TasI AATT 7 cut(s) 15, 126, 182, 271, 300, 327, 333
Tru1I TTAA 3 cut(s) 171, 299, 303
Tru9I TTAA 3 cut(s) 171, 299, 303
TscAI CASTG 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 2 cut(s) 15, 182
XceI RCATGY 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.