RchiOBHm_Chr2g0159901
ERF Family

Transducin WD40 repeat-like superfamily protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
75971457 .. 75972645
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 321 bp
ATGGACAGACGAGGGCTAAAAGCGATGTTCAACTCACATCTAAGTTTTTATGTTATCTCTGCGAATATTCAGAACACGGCATTCCAAACATGCCTGAAAAATATGGCCTACCTATGCTTTGTTCTGTTTGATATATTGGAGGAATATGATACCCATGATCCGACAGGACATTGTGCCATGGTTCTGCCTTTTCTGCGAAAGAGGTCGAAAATTATTGAAATTGTGGCAGCACATGACATTGTGTTCGCACTTGCGCAGTCTGGTGTTTGTGCAGCGTTTAGCCGAGATATGCAGAAACCAATCAGAGGATATGCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.05

Weight (kDa)

8.41

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7899 PF25463 40 - 101 1.3e-18 Domain of unknown function (DUF7899)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 255
AclWI GGATC 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 305
AgsI TTSAA 2 cut(s) 31, 218
AlwI GGATC 1 cut(s) 152
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 2 cut(s) 227, 272
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
AspLEI GCGC 1 cut(s) 256
BbvI GCAGC 2 cut(s) 239, 284
BceAI ACGGC 1 cut(s) 93
BisI GCNGC 2 cut(s) 228, 273
BlsI GCNGC 2 cut(s) 229, 274
BsaJI CCNNGG 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 305
BseXI GCAGC 2 cut(s) 239, 284
BsgI GTGCAG 1 cut(s) 291
BshFI GGCC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 305
BsmI GAATGC 1 cut(s) 80
BsnI GGCC 1 cut(s) 107
Bsp143I GATC 1 cut(s) 157
Bsp19I CCATGG 1 cut(s) 177
BspANI GGCC 1 cut(s) 107
BspPI GGATC 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 41
BstDSI CCRYGG 1 cut(s) 177
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 239, 284
BsuRI GGCC 1 cut(s) 107
BtgI CCRYGG 1 cut(s) 177
BtgZI GCGATG 1 cut(s) 38
CfoI GCGC 1 cut(s) 256
CviAII CATG 4 cut(s) 90, 155, 178, 233
CviJI RGCY 3 cut(s) 16, 107, 282
CviKI_1 RGCY 3 cut(s) 16, 107, 282
DdeI CTNAG 1 cut(s) 41
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 4 cut(s) 93, 158, 181, 236
FatI CATG 4 cut(s) 89, 154, 177, 232
Fnu4HI GCNGC 2 cut(s) 228, 273
Fsp4HI GCNGC 2 cut(s) 228, 273
FspI TGCGCA 1 cut(s) 255
GlaI GCGC 1 cut(s) 255
GluI GCNGC 2 cut(s) 228, 273
HaeIII GGCC 1 cut(s) 107
HhaI GCGC 1 cut(s) 256
Hin1II CATG 4 cut(s) 93, 158, 181, 236
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
Hpy188I TCNGA 4 cut(s) 72, 162, 305, 320
HpyCH4V TGCA 2 cut(s) 272, 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpyF3I CTNAG 1 cut(s) 41
Hsp92II CATG 4 cut(s) 93, 158, 181, 236
HspAI GCGC 1 cut(s) 254
Kzo9I GATC 1 cut(s) 157
LpnPI CCDG 3 cut(s) 107, 150, 246
Lsp1109I GCAGC 2 cut(s) 239, 284
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MluCI AATT 2 cut(s) 210, 219
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 4 cut(s) 5, 133, 195, 299
Mva1269I GAATGC 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 193
NcoI CCATGG 1 cut(s) 177
NdeII GATC 1 cut(s) 157
NlaIII CATG 4 cut(s) 93, 158, 181, 236
NmeAIII GCCGAG 1 cut(s) 308
NsbI TGCGCA 1 cut(s) 255
NspI RCATGY 1 cut(s) 93
PctI GAATGC 1 cut(s) 80
PkrI GCNGC 2 cut(s) 229, 274
SatI GCNGC 2 cut(s) 228, 273
Sau3AI GATC 1 cut(s) 157
SetI ASST 2 cut(s) 114, 206
Sse9I AATT 2 cut(s) 210, 219
SspI AATATT 1 cut(s) 67
StyI CCWWGG 1 cut(s) 177
TaqI TCGA 1 cut(s) 206
TasI AATT 2 cut(s) 210, 219
TseI GCWGC 2 cut(s) 227, 272
XceI RCATGY 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.