RchiOBHm_Chr2g0163711

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
79074860 .. 79076540
1681 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 249 bp
ATGGGGAGAAAAGATAATGCACTGAGCCAACCTTTTCCAGCTGAAAGAGAGAAGATTCTGGATAAACAGTATCACAGCCTTATTGAGCAACTAGGAAGCAAAACAGGTGCACAAGCAGAAGGCGTAGTTGGTGAAATTCATTTGAAAGAGATGGAGCTGGAAACATTAAATGCATTGTGCAGGAATCTCGAAAGCAGCAACAATGAGATGAGTGCTGCTAGAAATTGGTTTAGACAAAGTTACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.32

Weight (kDa)

5.64

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 135
AgsI TTSAA 1 cut(s) 145
AjuI GAANNNNNNNTTGG 2 cut(s) 111, 143
AluBI AGCT 2 cut(s) 41, 157
AluI AGCT 2 cut(s) 41, 157
Alw21I GWGCWC 1 cut(s) 112
Alw44I GTGCAC 1 cut(s) 108
ApaLI GTGCAC 1 cut(s) 108
ApeKI GCWGC 2 cut(s) 195, 215
ApoI RAATTY 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 2 cut(s) 202, 207
BccI CCATC 1 cut(s) 145
BcgI CGANNNNNNTGC 2 cut(s) 169, 203
BfaI CTAG 2 cut(s) 92, 219
BisI GCNGC 2 cut(s) 196, 216
BlsI GCNGC 2 cut(s) 197, 217
BseMII CTCAG 1 cut(s) 14
BseSI GKGCMC 1 cut(s) 112
BseXI GCAGC 2 cut(s) 202, 207
BsgI GTGCAG 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 112
BspCNI CTCAG 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 23
BstSLI GKGCMC 1 cut(s) 112
BstV1I GCAGC 2 cut(s) 202, 207
BtsIMutI CAGTG 1 cut(s) 20
CviJI RGCY 4 cut(s) 27, 41, 78, 157
CviKI_1 RGCY 4 cut(s) 27, 41, 78, 157
DdeI CTNAG 1 cut(s) 23
EcoT22I ATGCAT 1 cut(s) 175
Fnu4HI GCNGC 2 cut(s) 196, 216
Fsp4HI GCNGC 2 cut(s) 196, 216
FspBI CTAG 2 cut(s) 92, 219
GluI GCNGC 2 cut(s) 196, 216
HinfI GANTC 2 cut(s) 55, 184
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 2 cut(s) 59, 188
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4V TGCA 4 cut(s) 20, 110, 173, 180
HpyF3I CTNAG 1 cut(s) 23
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 5 cut(s) 44, 51, 90, 143, 166
Lsp1109I GCAGC 2 cut(s) 202, 207
MaeI CTAG 2 cut(s) 92, 219
MaeIII GTNAC 1 cut(s) 239
MboII GAAGA 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 2 cut(s) 135, 223
Mph1103I ATGCAT 1 cut(s) 175
MseI TTAA 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 41
NsiI ATGCAT 1 cut(s) 175
PfeI GAWTC 2 cut(s) 55, 184
PkrI GCNGC 2 cut(s) 197, 217
PvuII CAGCTG 1 cut(s) 41
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 2 cut(s) 196, 216
SduI GDGCHC 1 cut(s) 112
SetI ASST 4 cut(s) 34, 43, 109, 159
SgeI CNNG 9 cut(s) 50, 71, 104, 117, 125, 170, 193, 200, 231
Sse9I AATT 2 cut(s) 135, 223
SspMI CTAG 2 cut(s) 92, 219
TaaI ACNGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 189
TasI AATT 2 cut(s) 135, 223
TfiI GAWTC 2 cut(s) 55, 184
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 1 cut(s) 27
TseI GCWGC 2 cut(s) 195, 215
TspDTI ATGAA 1 cut(s) 128
TspRI CASTG 1 cut(s) 27
VneI GTGCAC 1 cut(s) 108
XapI RAATTY 1 cut(s) 135
XspI CTAG 2 cut(s) 92, 219
Zsp2I ATGCAT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.