RchiOBHm_Chr2g0167791

Pentatricopeptide repeat-containing protein At5g50390

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
82149278 .. 82149723
446 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 201 bp
ATGGAGGCTCCTCTGTTAAGGTACCAAAGCTTAGCGTTGGACCAGATTCAATGTAGCATTAGCTTCCCTTGTCATTCTCAGATTCTAAGTTTTCCAAGCAGAGATCTTTGTTTTCTGGCTACTGTTTTTCCCTTAATAGCCCAAAATGGAGGAACCCATTTTCCCAAATTAGGTGTTGTTCATATGTGGAGCAACAGCTGA

Protein Analysis

66

Amino Acids

7.36

Weight (kDa)

6.8

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 21
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 1 cut(s) 50
AloI GAACNNNNNNTCC 2 cut(s) 145, 177
AluBI AGCT 3 cut(s) 30, 63, 198
AluI AGCT 3 cut(s) 30, 63, 198
Asp718I GGTACC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 40
AvaII GGWCC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 21
BglII AGATCT 1 cut(s) 103
BlpI GCTNAGC 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 3 cut(s) 9, 23, 154
Bpu1102I GCTNAGC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 92
BshNI GGYRCC 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 170
Bsp143I GATC 1 cut(s) 103
Bsp1720I GCTNAGC 1 cut(s) 31
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 3 cut(s) 9, 23, 154
BspT107I GGYRCC 1 cut(s) 21
BssMI GATC 1 cut(s) 103
Bst4CI ACNGT 1 cut(s) 124
BstDEI CTNAG 3 cut(s) 31, 78, 86
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 22
CviJI RGCY 6 cut(s) 8, 30, 63, 119, 140, 198
CviKI_1 RGCY 6 cut(s) 8, 30, 63, 119, 140, 198
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 3 cut(s) 31, 78, 86
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 40
FaiI YATR 2 cut(s) 183, 185
FauNDI CATATG 1 cut(s) 183
HindIII AAGCTT 1 cut(s) 28
HinfI GANTC 2 cut(s) 46, 82
Hpy188I TCNGA 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 124
HpyF3I CTNAG 3 cut(s) 31, 78, 86
KpnI GGTACC 1 cut(s) 25
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 2 cut(s) 13, 189
LpnPI CCDG 2 cut(s) 56, 101
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MflI RGATCY 1 cut(s) 103
MluCI AATT 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 18
MnlI CCTC 2 cut(s) 21, 143
MseI TTAA 2 cut(s) 17, 134
MspA1I CMGCKG 1 cut(s) 198
NdeI CATATG 1 cut(s) 183
NdeII GATC 1 cut(s) 103
NlaIV GGNNCC 3 cut(s) 9, 23, 154
PfeI GAWTC 2 cut(s) 46, 82
PspN4I GGNNCC 3 cut(s) 9, 23, 154
PspPI GGNCC 1 cut(s) 40
PsuI RGATCY 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 198
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SaqAI TTAA 2 cut(s) 17, 134
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 1 cut(s) 40
SetI ASST 5 cut(s) 23, 32, 65, 175, 200
SgeI CNNG 4 cut(s) 55, 81, 108, 128
SinI GGWCC 1 cut(s) 40
Sse9I AATT 1 cut(s) 167
TaaI ACNGT 1 cut(s) 124
TasI AATT 1 cut(s) 167
TfiI GAWTC 2 cut(s) 46, 82
Tru1I TTAA 2 cut(s) 17, 134
Tru9I TTAA 2 cut(s) 17, 134
TspDTI ATGAA 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.