Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

84543486 .. 84544710

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAAACTGACGGAGACTCCCACCCTCCAGAATAGAGACAGAAAGGAGAGGAAGATAGAAAGAGAGATCGAAATGGCAGGAAGGTCTTGTTACAGAGATGTCCTGCCATTTACAGCAATGGTGACTATGGAGTCCATGGACGTGGGCTTGAACACACTGTTCAAAGCTGCAAAAATGACAGGAATGAGCTACCATATCTTTATTGCCTACATTTACTCCATAGTTGCCTACATTTACTCCATAGCTGCTCTTGCTCTTGTTCCAGCTCCTTTCATCTCCCACAGGAGCTCATCTCAGATAATGGGGTATGCAGGAATCAATTACAGCTCTCCAATGCTATATTCTGCTATCAGCAACCTTCTGCCAGCTTTCACTTTCATTCTTGCCATCATTTTCAGGCTCTTTCCATCTTTCAACCCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

141

Amino Acids

15.94

Weight (kDa)

9.3

Isoelectric Point (pI)

59.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	151, 163, 415
AjiI	CACGTC	1 cut(s)	142
AjuI	GAANNNNNNNTTGG	2 cut(s)	325, 357
AluBI	AGCT	7 cut(s)	167, 189, 245, 266, 288, 327, 368
AluI	AGCT	7 cut(s)	167, 189, 245, 266, 288, 327, 368
Alw21I	GWGCWC	1 cut(s)	290
Alw26I	GTCTC	2 cut(s)	8, 30
ApeKI	GCWGC	2 cut(s)	167, 245
AsuHPI	GGTGA	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	290
BbvI	GCAGC	2 cut(s)	154, 232
BccI	CCATC	2 cut(s)	395, 415
BcoDI	GTCTC	2 cut(s)	8, 30
BisI	GCNGC	2 cut(s)	168, 246
BlsI	GCNGC	2 cut(s)	169, 247
BmgBI	CACGTC	1 cut(s)	142
BplI	GAGNNNNNCTC	2 cut(s)	277, 309
BpmI	CTGGAG	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	135
BsaXI	ACNNNNNCTCC	5 cut(s)	31, 200, 221, 230, 251
Bse3DI	GCAATG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	135
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	308
BseXI	GCAGC	2 cut(s)	154, 232
BsiHKAI	GWGCWC	1 cut(s)	290
BsmAI	GTCTC	2 cut(s)	8, 30
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	1 cut(s)	66
Bsp19I	CCATGG	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	135
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	2 cut(s)	8, 30
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstV1I	GCAGC	2 cut(s)	154, 232
BstXI	CCANNNNNNTGG	1 cut(s)	142
BtgI	CCRYGG	1 cut(s)	135
BtrI	CACGTC	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	366
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	9 cut(s)	147, 167, 189, 245, 266, 288, 327, 368, 400
CviKI_1	RGCY	9 cut(s)	147, 167, 189, 245, 266, 288, 327, 368, 400
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
DrdI	GACNNNNNNGTC	1 cut(s)	130
DseDI	GACNNNNNNGTC	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	1 cut(s)	139
FaiI	YATR	7 cut(s)	128, 137, 195, 221, 242, 309, 340
FatI	CATG	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	168, 246
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	2 cut(s)	168, 246
GluI	GCNGC	2 cut(s)	168, 246
GsuI	CTGGAG	1 cut(s)	11
Hin1II	CATG	1 cut(s)	139
HinfI	GANTC	3 cut(s)	16, 131, 315
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	75, 368
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	2 cut(s)	170, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	2 cut(s)	271, 285
LpnPI	CCDG	9 cut(s)	41, 63, 116, 165, 268, 276, 297, 378, 382
Lsp1109I	GCAGC	2 cut(s)	154, 232
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	2 cut(s)	89, 121
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	1 cut(s)	319
MlyI	GAGTC	2 cut(s)	10, 140
MnlI	CCTC	2 cut(s)	35, 42
MslI	CAYNNNNRTG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	251
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	315
PkrI	GCNGC	2 cut(s)	169, 247
PleI	GAGTC	2 cut(s)	10, 139
PpsI	GAGTC	2 cut(s)	10, 139
Psp124BI	GAGCTC	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	140
SacI	GAGCTC	1 cut(s)	290
SatI	GCNGC	2 cut(s)	168, 246
Sau3AI	GATC	1 cut(s)	66
SchI	GAGTC	2 cut(s)	10, 140
SduI	GDGCHC	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	319
SstI	GAGCTC	1 cut(s)	290
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	159
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	319
TfiI	GAWTC	1 cut(s)	315
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	2 cut(s)	167, 245
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	3 cut(s)	17, 262, 367
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.