RchiOBHm_Chr2g0172401

DNA (cytosine-5)-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
85780157 .. 85781313
1157 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 681 bp
ATGCTGGGTTTCTTAGTTGGATATAGAGTCCTTCGTTTTCTTATTCTGTGGAAATTAGCATTCCTACATCTGAGGAGGAGAACAAACCTATTTAACTTTAGGTTTCAATTTTTCTATGATCATTGTTGTAGACTTTCAAATCTAAAATCACTTTTTGTCTACTCTCTGCTTTTACATTTCACTTATGATTTCAATTTATTCCAGATTGATACAGTAGCCTATCATCTCTGTGTGTTGAAAGATCGGTTCCCCAATGGCATCAATCTCCTCTCTCTTTTCTCTGGAATTGGTGGTGCCGAGATAGCCCTCCATCGGCTTGGCATTCGAACGAAGAATGTTGTGTCTGTTGAGATTTCAGCGGTGAGCAGAACTGTTGTGAGGACTTGGTGGGAGCAAACCAACCAAAAAGGAAACTTGTATCACCTCGCTGATGTGCAAGAGTTGAATGCGGTTGGAGCATTAGTGCATTACATCAATACATTTGGTGGTTTTTGCTACTGGTTTGTCTTCTTGGTGTCTATTTGGCACAACAATCTCGTGGTTGGTGGGAGCCCGTGCAACAATCTTGCCGGTAGCAACAGATATCATAGGGATGTGCTTGAGGGAAAAGAATCTTCTCTGTTTTATGATTATTTCCGTATATTAGACTTGGTGAAGGGTCTTATGGCAAGATATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

226

Amino Acids

26.34

Weight (kDa)

9.46

Isoelectric Point (pI)

27.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 293
AccI GTMKAC 2 cut(s) 130, 159
AciI CCGC 2 cut(s) 359, 449
AfiI CCNNNNNNNGG 1 cut(s) 312
AgsI TTSAA 5 cut(s) 107, 138, 193, 238, 445
AluBI AGCT 1 cut(s) 678
AluI AGCT 1 cut(s) 678
AsuHPI GGTGA 3 cut(s) 373, 413, 664
AsuII TTCGAA 1 cut(s) 325
BanI GGYRCC 1 cut(s) 293
BanII GRGCYC 1 cut(s) 554
BauI CACGAG 1 cut(s) 536
BbsI GAAGAC 1 cut(s) 499
BccI CCATC 1 cut(s) 318
BclI TGATCA 1 cut(s) 118
BmiI GGNNCC 3 cut(s) 248, 295, 551
BmsI GCATC 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 499
Bpu14I TTCGAA 1 cut(s) 325
BpuEI CTTGAG 1 cut(s) 620
BsaXI ACNNNNNCTCC 2 cut(s) 447, 477
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse118I RCCGGY 1 cut(s) 569
Bse1I ACTGG 1 cut(s) 503
BseGI GGATG 1 cut(s) 598
BseLI CCNNNNNNNGG 1 cut(s) 312
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 503
BseRI GAGGAG 3 cut(s) 88, 91, 257
BseYI CCCAGC 1 cut(s) 4
BshNI GGYRCC 1 cut(s) 293
BsiSI CCGG 1 cut(s) 570
BslI CCNNNNNNNGG 1 cut(s) 312
BsmI GAATGC 3 cut(s) 59, 321, 451
Bsp119I TTCGAA 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 554
Bsp143I GATC 2 cut(s) 118, 241
BspACI CCGC 2 cut(s) 359, 449
BspCNI CTCAG 1 cut(s) 63
BspLI GGNNCC 3 cut(s) 248, 295, 551
BspT104I TTCGAA 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 569
BsrI ACTGG 1 cut(s) 503
BssAI RCCGGY 1 cut(s) 569
BssMI GATC 2 cut(s) 118, 241
BssSI CACGAG 1 cut(s) 536
Bst2BI CACGAG 1 cut(s) 536
Bst4CI ACNGT 2 cut(s) 214, 373
BstBI TTCGAA 1 cut(s) 325
BstDEI CTNAG 2 cut(s) 13, 71
BstF5I GGATG 1 cut(s) 598
BstKTI GATC 2 cut(s) 121, 244
BstMBI GATC 2 cut(s) 118, 241
BstMWI GCNNNNNNNGC 2 cut(s) 302, 455
BstV2I GAAGAC 1 cut(s) 499
BstXI CCANNNNNNTGG 1 cut(s) 317
BtsCI GGATG 1 cut(s) 598
Cfr10I RCCGGY 1 cut(s) 569
CviJI RGCY 5 cut(s) 218, 305, 316, 552, 678
CviKI_1 RGCY 5 cut(s) 218, 305, 316, 552, 678
DdeI CTNAG 2 cut(s) 13, 71
DpnI GATC 2 cut(s) 120, 243
DpnII GATC 2 cut(s) 118, 241
Eco24I GRGCYC 1 cut(s) 554
Eco32I GATATC 1 cut(s) 584
EcoRV GATATC 1 cut(s) 584
EcoT38I GRGCYC 1 cut(s) 554
FaiI YATR 8 cut(s) 24, 117, 186, 588, 627, 641, 665, 675
FbaI TGATCA 1 cut(s) 118
FblI GTMKAC 2 cut(s) 130, 159
FokI GGATG 1 cut(s) 605
FriOI GRGCYC 1 cut(s) 554
GsaI CCCAGC 1 cut(s) 8
HapII CCGG 1 cut(s) 570
HinfI GANTC 2 cut(s) 27, 611
HpaII CCGG 1 cut(s) 570
HphI GGTGA 3 cut(s) 373, 413, 664
Hpy166II GTNNAC 2 cut(s) 131, 160
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 2 cut(s) 202, 282
Hpy8I GTNNAC 2 cut(s) 131, 160
HpyAV CCTTC 2 cut(s) 41, 649
HpyCH4III ACNGT 2 cut(s) 214, 373
HpyCH4V TGCA 3 cut(s) 436, 466, 558
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 455
HpyF3I CTNAG 2 cut(s) 13, 71
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 2 cut(s) 118, 241
LmnI GCTCC 3 cut(s) 391, 455, 549
LpnPI CCDG 4 cut(s) 215, 267, 484, 583
LweI GCATC 1 cut(s) 267
MalI GATC 2 cut(s) 120, 243
MboI GATC 2 cut(s) 118, 241
MboII GAAGA 3 cut(s) 343, 499, 606
MhlI GDGCHC 1 cut(s) 554
MluCI AATT 4 cut(s) 53, 107, 193, 285
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 433
MnlI CCTC 7 cut(s) 66, 69, 278, 317, 372, 434, 595
MseI TTAA 1 cut(s) 93
MslI CAYNNNNRTG 2 cut(s) 228, 591
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 1 cut(s) 570
Mva1269I GAATGC 3 cut(s) 59, 321, 451
MwoI GCNNNNNNNGC 2 cut(s) 302, 455
NdeII GATC 2 cut(s) 118, 241
NlaIV GGNNCC 3 cut(s) 248, 295, 551
NmeAIII GCCGAG 1 cut(s) 322
NspV TTCGAA 1 cut(s) 325
PctI GAATGC 3 cut(s) 59, 321, 451
PfeI GAWTC 1 cut(s) 611
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PspFI CCCAGC 1 cut(s) 4
PspN4I GGNNCC 3 cut(s) 248, 295, 551
RseI CAYNNNNRTG 2 cut(s) 228, 591
SaqAI TTAA 1 cut(s) 93
Sau3AI GATC 2 cut(s) 118, 241
SchI GAGTC 1 cut(s) 36
SduI GDGCHC 1 cut(s) 554
SetI ASST 4 cut(s) 90, 104, 426, 680
SfaNI GCATC 1 cut(s) 267
SfuI TTCGAA 1 cut(s) 325
SmiMI CAYNNNNRTG 2 cut(s) 228, 591
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 4 cut(s) 53, 107, 193, 285
SsiI CCGC 2 cut(s) 359, 449
TaaI ACNGT 2 cut(s) 214, 373
TaqI TCGA 1 cut(s) 325
TasI AATT 4 cut(s) 53, 107, 193, 285
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TspGWI ACGGA 1 cut(s) 626
XmiI GTMKAC 2 cut(s) 130, 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.