RchiOBHm_Chr2g0172701

UPF0586 protein C9orf41 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
85993524 .. 85994292
769 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGTTGATAAGGGTCAGAAAGAACGTGATCAATGCTACAGGCCTACAGTTGAAGAACTTGATTCACTATATGTTGATCGCTATTATGTTGAAGAGCCCTCCTGCCTGTTTAGTTCCTGGTGCTGGACTTGGGCGGCTTGCATTGGAGATCTCATGTCGAGGTGTGCATACATTGTGGTTGTTAAAAATTCTGTTTTTTTTTAGAGAAAGGAGGTCAATCTTTATTGAAGAAAAGAAAAATTATAAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

83

Amino Acids

9.59

Weight (kDa)

10.5

Isoelectric Point (pI)

70.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 243, 250
AciI CCGC 1 cut(s) 133
AcsI RAATTY 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 3 cut(s) 52, 91, 227
AjnI CCWGG 1 cut(s) 115
AoxI GGCC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 186
BanII GRGCYC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 117
BclI TGATCA 1 cut(s) 27
BfmI CTRYAG 2 cut(s) 36, 44
BglII AGATCT 1 cut(s) 147
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 122
BseBI CCWGG 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 122
BshFI GGCC 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 122
BsnI GGCC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 98
Bsp143I GATC 3 cut(s) 27, 75, 147
BspACI CCGC 1 cut(s) 133
BspANI GGCC 1 cut(s) 42
BspQI GCTCTTC 1 cut(s) 86
BssMI GATC 3 cut(s) 27, 75, 147
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 138
BstKTI GATC 3 cut(s) 30, 78, 150
BstMBI GATC 3 cut(s) 27, 75, 147
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 2 cut(s) 36, 44
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BsuRI GGCC 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 138
CviAII CATG 1 cut(s) 153
CviJI RGCY 3 cut(s) 42, 96, 136
CviKI_1 RGCY 3 cut(s) 42, 96, 136
DpnI GATC 3 cut(s) 29, 77, 149
DpnII GATC 3 cut(s) 27, 75, 147
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco147I AGGCCT 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 98
FaeI CATG 1 cut(s) 156
FaiI YATR 7 cut(s) 69, 71, 86, 154, 168, 243, 250
FatI CATG 1 cut(s) 152
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 134
GluI GCNGC 1 cut(s) 134
HaeIII GGCC 1 cut(s) 42
Hin1II CATG 1 cut(s) 156
HinfI GANTC 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 17
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 2 cut(s) 140, 166
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 27
Kzo9I GATC 3 cut(s) 27, 75, 147
LguI GCTCTTC 1 cut(s) 86
LpnPI CCDG 6 cut(s) 24, 102, 108, 114, 118, 129
MaeII ACGT 1 cut(s) 24
MalI GATC 3 cut(s) 29, 77, 149
MboI GATC 3 cut(s) 27, 75, 147
MboII GAAGA 3 cut(s) 64, 103, 239
MflI RGATCY 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 3 cut(s) 186, 238, 245
MnlI CCTC 3 cut(s) 108, 152, 204
MseI TTAA 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
NdeII GATC 3 cut(s) 27, 75, 147
NlaIII CATG 1 cut(s) 156
PceI AGGCCT 1 cut(s) 42
PciSI GCTCTTC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 135
PsiI TTATAA 2 cut(s) 243, 250
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PsuI RGATCY 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 3 cut(s) 27, 75, 147
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 98
SetI ASST 3 cut(s) 27, 163, 215
SfcI CTRYAG 2 cut(s) 36, 44
Sse9I AATT 3 cut(s) 186, 238, 245
SseBI AGGCCT 1 cut(s) 42
SsiI CCGC 1 cut(s) 133
StuI AGGCCT 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 48
TaiI ACGT 1 cut(s) 27
TaqI TCGA 1 cut(s) 157
TasI AATT 3 cut(s) 186, 238, 245
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
XapI RAATTY 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.