Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

86000544 .. 86001298

Gene Structure 755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAAGATGAACACTCCCCTGAACAAGTTCCACTAAAACAAGCTGTCCCTACTCATCTCTTTGCTTTACCAGTTGATGAAGGTGGAAAAGCCACAGAATTCAGACCATTCTCAATAGCATCACCACACATGCGAGCCTTCGGTTCTCCCTATTCTCTTGCTTCTTCTCCACCTTCTCCATCCCTCCACTCCTCGCCGTCATCCGCGACGATCTCCACCTCACCGAAACCGACACCTCACGAGCCGCGCCATCGCAGCCTTCATCGGCTCCATCTTCTCCCGCGTTGCCATGGGCTCCATCGGCAACCACCTCGGCCGCCGCGTCGCCTCCGGCACCCTCTCCCTCCTCGCCTCCCCTATCATCCTCGCCACCGGCCTCGTCTCCTCCCCAAACGTCTTTATCATTATCCGCCTTCCTCGTCGGCTTCTGCCTCGCCAACTTCGTCGCCAACCAGTTCTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0009705 GO:0009987 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:0071944 GO:0098588 GO:0098656 GO:0098805 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

MFS_1

Protein Analysis

154

Amino Acids

17.1

Weight (kDa)

11.25

Isoelectric Point (pI)

94.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	333
AccII	CGCG	4 cut(s)	206, 247, 283, 322
AciI	CCGC	6 cut(s)	204, 245, 281, 317, 320, 410
AcoI	YGGCCR	1 cut(s)	314
AcsI	RAATTY	1 cut(s)	98
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	386
AoxI	GGCC	2 cut(s)	314, 374
ApeKI	GCWGC	1 cut(s)	255
ApoI	RAATTY	1 cut(s)	98
Asp700I	GAANNNNTTC	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	249
AsuHPI	GGTGA	2 cut(s)	114, 213
BanI	GGYRCC	1 cut(s)	333
BanII	GRGCYC	1 cut(s)	297
BauI	CACGAG	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	4 cut(s)	187, 258, 279, 306
BceAI	ACGGC	1 cut(s)	181
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BcoDI	GTCTC	1 cut(s)	386
BisI	GCNGC	4 cut(s)	245, 256, 317, 320
BlsI	GCNGC	4 cut(s)	246, 257, 318, 321
BmiI	GGNNCC	3 cut(s)	269, 296, 335
BmsI	GCATC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	289, 311
Bse118I	RCCGGY	1 cut(s)	372
Bse1I	ACTGG	2 cut(s)	71, 453
BseDI	CCNNGG	2 cut(s)	289, 311
BseGI	GGATG	3 cut(s)	179, 200, 361
BseNI	ACTGG	2 cut(s)	71, 453
BseRI	GAGGAG	3 cut(s)	181, 336, 374
BseX3I	CGGCCG	1 cut(s)	314
BseXI	GCAGC	1 cut(s)	267
Bsh1236I	CGCG	4 cut(s)	206, 247, 283, 322
Bsh1285I	CGRYCG	1 cut(s)	317
BshFI	GGCC	2 cut(s)	316, 376
BshNI	GGYRCC	1 cut(s)	333
BsiEI	CGRYCG	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	331, 373
BslFI	GGGAC	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	386
BsmBI	CGTCTC	1 cut(s)	386
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	2 cut(s)	316, 376
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	289
BspACI	CCGC	6 cut(s)	204, 245, 281, 317, 320, 410
BspANI	GGCC	2 cut(s)	316, 376
BspFNI	CGCG	4 cut(s)	206, 247, 283, 322
BspLI	GGNNCC	3 cut(s)	269, 296, 335
BspT107I	GGYRCC	1 cut(s)	333
BsrFI	RCCGGY	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	71, 453
BssAI	RCCGGY	1 cut(s)	372
BssECI	CCNNGG	2 cut(s)	289, 311
BssMI	GATC	1 cut(s)	210
BssSI	CACGAG	1 cut(s)	239
BssT1I	CCWWGG	1 cut(s)	289
Bst2BI	CACGAG	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	135
BstDSI	CCRYGG	1 cut(s)	289
BstF5I	GGATG	3 cut(s)	179, 200, 361
BstFNI	CGCG	4 cut(s)	206, 247, 283, 322
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	1 cut(s)	213
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	1 cut(s)	210
BstMCI	CGRYCG	1 cut(s)	317
BstMWI	GCNNNNNNNGC	2 cut(s)	255, 301
BstNSI	RCATGY	1 cut(s)	133
BstUI	CGCG	4 cut(s)	206, 247, 283, 322
BstV1I	GCAGC	1 cut(s)	267
BstZI	CGGCCG	1 cut(s)	314
BsuRI	GGCC	2 cut(s)	316, 376
BtgI	CCRYGG	1 cut(s)	289
BtgZI	GCGATG	1 cut(s)	236
BtsCI	GGATG	3 cut(s)	179, 200, 361
Cac8I	GCNNGC	1 cut(s)	135
CfoI	GCGC	1 cut(s)	249
Cfr10I	RCCGGY	1 cut(s)	372
CseI	GACGC	1 cut(s)	311
CviAII	CATG	2 cut(s)	130, 290
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
EaeI	YGGCCR	1 cut(s)	314
EagI	CGGCCG	1 cut(s)	314
EciI	GGCGGA	1 cut(s)	399
EclXI	CGGCCG	1 cut(s)	314
Eco130I	CCWWGG	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	297
Eco52I	CGGCCG	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	386
FaeI	CATG	2 cut(s)	133, 293
FaiI	YATR	2 cut(s)	131, 291
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	2 cut(s)	129, 289
FauI	CCCGC	1 cut(s)	288
Fnu4HI	GCNGC	4 cut(s)	245, 256, 317, 320
FokI	GGATG	3 cut(s)	166, 187, 348
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	4 cut(s)	245, 256, 317, 320
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	4 cut(s)	245, 256, 317, 320
HaeIII	GGCC	2 cut(s)	316, 376
HapII	CCGG	2 cut(s)	331, 373
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	133, 293
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HpaII	CCGG	2 cut(s)	331, 373
HphI	GGTGA	2 cut(s)	114, 213
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	2 cut(s)	239, 459
Hpy99I	CGWCG	4 cut(s)	211, 327, 424, 448
HpyAV	CCTTC	5 cut(s)	74, 148, 183, 269, 423
HpyCH4IV	ACGT	1 cut(s)	394
HpyF10VI	GCNNNNNNNGC	2 cut(s)	255, 301
HpySE526I	ACGT	1 cut(s)	394
Hsp92II	CATG	2 cut(s)	133, 293
HspAI	GCGC	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	2 cut(s)	273, 300
LpnPI	CCDG	5 cut(s)	33, 84, 344, 386, 444
Lsp1109I	GCAGC	1 cut(s)	267
LweI	GCATC	1 cut(s)	128
MaeII	ACGT	1 cut(s)	394
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	3 cut(s)	17, 156, 266
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	1 cut(s)	98
MroXI	GAANNNNTTC	1 cut(s)	27
MspI	CCGG	2 cut(s)	331, 373
MvnI	CGCG	4 cut(s)	206, 247, 283, 322
MwoI	GCNNNNNNNGC	2 cut(s)	255, 301
NcoI	CCATGG	1 cut(s)	289
NdeII	GATC	1 cut(s)	210
NlaIII	CATG	2 cut(s)	133, 293
NlaIV	GGNNCC	3 cut(s)	269, 296, 335
NmeAIII	GCCGAG	1 cut(s)	292
NspI	RCATGY	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	2 cut(s)	319, 440
PdmI	GAANNNNTTC	1 cut(s)	27
PkrI	GCNGC	4 cut(s)	246, 257, 318, 321
PspN4I	GGNNCC	3 cut(s)	269, 296, 335
SatI	GCNGC	4 cut(s)	245, 256, 317, 320
Sau3AI	GATC	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	7 cut(s)	46, 85, 175, 221, 238, 313, 397
SfaNI	GCATC	1 cut(s)	128
Sse9I	AATT	1 cut(s)	98
SsiI	CCGC	6 cut(s)	204, 245, 281, 317, 320, 410
StyI	CCWWGG	1 cut(s)	289
TaiI	ACGT	1 cut(s)	397
TasI	AATT	1 cut(s)	98
TauI	GCSGC	3 cut(s)	247, 319, 322
TseI	GCWGC	1 cut(s)	255
TspDTI	ATGAA	3 cut(s)	24, 93, 251
XapI	RAATTY	1 cut(s)	98
XceI	RCATGY	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.