Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

86001805 .. 86002068

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAGTGGGAGGCTGTGGGGTTTGTGGGAGACGCAAACGGTGGAGGGTTTGCTGTGCTTGTTACTCGGCCGAGTTAACTCGCTCTGGAGCTCCATACTTGTCATGTGTGTGTTCTCAGTTTTTGTTCAGGCCGCCGCGGAACTCACGTTTGGACGTTTGGTGTGGTACCATTTGTTTCCAAAAGGTAAAAGAGTTTTCAGCTTTTACGTCTTGTTTTGGTTTTGGGGGTTTGTTGTACGGATGGCAATGGGGAGGGTAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0009705 GO:0009987 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:0071944 GO:0098588 GO:0098656 GO:0098805 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

MFS_1

Protein Analysis

87

Amino Acids

10.1

Weight (kDa)

10.04

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	165
AccB1I	GGYRCC	1 cut(s)	165
AccII	CGCG	1 cut(s)	137
AciI	CCGC	3 cut(s)	132, 135, 137
AcoI	YGGCCR	1 cut(s)	67
AfaI	GTAC	2 cut(s)	167, 237
AjuI	GAANNNNNNNTTGG	2 cut(s)	132, 164
AluBI	AGCT	2 cut(s)	90, 201
AluI	AGCT	2 cut(s)	90, 201
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	23
AoxI	GGCC	2 cut(s)	67, 129
Asp718I	GGTACC	1 cut(s)	165
BanI	GGYRCC	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	92
BccI	CCATC	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	23
BisI	GCNGC	2 cut(s)	132, 135
BlsI	GCNGC	2 cut(s)	133, 136
BmiI	GGNNCC	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	135
Bse3DI	GCAATG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	129
BseX3I	CGGCCG	1 cut(s)	67
Bsh1236I	CGCG	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	2 cut(s)	69, 131
BshNI	GGYRCC	1 cut(s)	165
BsiEI	CGRYCG	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	23
BsmBI	CGTCTC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	69, 131
Bsp1286I	GDGCHC	1 cut(s)	92
BspACI	CCGC	3 cut(s)	132, 135, 137
BspANI	GGCC	2 cut(s)	69, 131
BspCNI	CTCAG	1 cut(s)	128
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	115
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	246
BstFNI	CGCG	1 cut(s)	137
BstMAI	GTCTC	1 cut(s)	23
BstMCI	CGRYCG	1 cut(s)	70
BstUI	CGCG	1 cut(s)	137
BstZI	CGGCCG	1 cut(s)	67
BsuRI	GGCC	2 cut(s)	69, 131
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	246
Cfr42I	CCGCGG	1 cut(s)	138
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	2 cut(s)	166, 236
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	5 cut(s)	13, 69, 90, 131, 201
CviKI_1	RGCY	5 cut(s)	13, 69, 90, 131, 201
CviQI	GTAC	2 cut(s)	166, 236
DdeI	CTNAG	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	67
EagI	CGGCCG	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	90
EclXI	CGGCCG	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	92
Eco52I	CGGCCG	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	92
Esp3I	CGTCTC	1 cut(s)	23
FaeI	CATG	1 cut(s)	106
FaiI	YATR	2 cut(s)	95, 104
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	132, 135
FokI	GGATG	1 cut(s)	253
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	2 cut(s)	132, 135
GluI	GCNGC	2 cut(s)	132, 135
GsuI	CTGGAG	1 cut(s)	106
HaeIII	GGCC	2 cut(s)	69, 131
HgaI	GACGC	1 cut(s)	40
Hin1II	CATG	1 cut(s)	106
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HpaI	GTTAAC	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	3 cut(s)	146, 154, 207
HpyF3I	CTNAG	1 cut(s)	115
HpySE526I	ACGT	3 cut(s)	146, 154, 207
Hsp92II	CATG	1 cut(s)	106
KpnI	GGTACC	1 cut(s)	169
KspAI	GTTAAC	1 cut(s)	76
KspI	CCGCGG	1 cut(s)	138
LmnI	GCTCC	2 cut(s)	87, 95
LpnPI	CCDG	2 cut(s)	70, 113
MaeII	ACGT	3 cut(s)	146, 154, 207
MaeIII	GTNAC	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	92
MnlI	CCTC	3 cut(s)	3, 37, 246
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	137
MvnI	CGCG	1 cut(s)	137
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	167
NmeAIII	GCCGAG	2 cut(s)	45, 95
PkrI	GCNGC	2 cut(s)	133, 136
Psp124BI	GAGCTC	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	167
RsaI	GTAC	2 cut(s)	167, 237
RsaNI	GTAC	2 cut(s)	166, 236
RseI	CAYNNNNRTG	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	92
SacII	CCGCGG	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	2 cut(s)	132, 135
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	6 cut(s)	92, 149, 157, 187, 203, 210
Sfr303I	CCGCGG	1 cut(s)	138
SgrBI	CCGCGG	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	107
SsiI	CCGC	3 cut(s)	132, 135, 137
SstI	GAGCTC	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	3 cut(s)	149, 157, 210
TauI	GCSGC	2 cut(s)	134, 137
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TspGWI	ACGGA	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.