RchiOBHm_Chr2g0173361
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029867
Physical Location & Seq
Forward (+)
86395942 .. 86396560
619 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
ATGTGTCAATACTGGACAGTTGAATTAATTCCGGTTGCATGCCCTGATGGACTGAAGGAAGCTGTAGTGCTTGTTTTTGCTAATAAAGGTGACCTTCCTAATGCATTCGGTGCTCCAGAAATAACTGATAGGCTTGCTGTTCATGGTCTCCCCCAACGTCGCTGGTACATCTTGACTTGCTGTGCAACATCTGGCGAGGGACTTTATGAGCATCACCCTAAACCCTAA

Protein Analysis

75

Amino Acids

8.31

Weight (kDa)

5.81

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 15 - 71 2.3e-12 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029867)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0173361 RchiOBHm_Chr4g0413951

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 74
AfaI GTAC 1 cut(s) 167
AgsI TTSAA 1 cut(s) 23
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 1 cut(s) 152
AseI ATTAAT 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 27
AsuHPI GGTGA 2 cut(s) 101, 206
Bbv12I GWGCWC 1 cut(s) 115
BccI CCATC 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 63
BmsI GCATC 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 152
BsaWI WCCGGW 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 17
BseNI ACTGG 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 115
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 213
BsmI GAATGC 1 cut(s) 104
Bso31I GGTCTC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 115
BspTNI GGTCTC 1 cut(s) 152
BsrI ACTGG 1 cut(s) 17
Bst4CI ACNGT 1 cut(s) 19
BstAPI GCANNNNNTGC 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 40, 135
BstEII GGTNACC 1 cut(s) 89
BstMAI GTCTC 1 cut(s) 152
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 42
BstPI GGTNACC 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 63
Cac8I GCNNGC 2 cut(s) 40, 135
Csp6I GTAC 1 cut(s) 166
CviAII CATG 2 cut(s) 39, 143
CviJI RGCY 2 cut(s) 62, 133
CviKI_1 RGCY 2 cut(s) 62, 133
CviQI GTAC 1 cut(s) 166
Eco31I GGTCTC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 74
Eco91I GGTNACC 1 cut(s) 89
EcoO65I GGTNACC 1 cut(s) 89
EcoT22I ATGCAT 1 cut(s) 106
FaeI CATG 2 cut(s) 42, 146
FaiI YATR 3 cut(s) 40, 144, 207
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FaqI GGGAC 1 cut(s) 213
FatI CATG 2 cut(s) 38, 142
GsuI CTGGAG 1 cut(s) 99
HapII CCGG 1 cut(s) 32
Hin1II CATG 2 cut(s) 42, 146
HpaII CCGG 1 cut(s) 32
HphI GGTGA 2 cut(s) 101, 206
Hpy188III TCNNGA 2 cut(s) 116, 172
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 2 cut(s) 49, 104
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 3 cut(s) 38, 104, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 157
Hsp92II CATG 2 cut(s) 42, 146
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 5 cut(s) 45, 57, 129, 148, 177
LweI GCATC 1 cut(s) 220
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 2 cut(s) 23, 27
MnlI CCTC 1 cut(s) 190
Mph1103I ATGCAT 1 cut(s) 106
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 1 cut(s) 26
MspI CCGG 1 cut(s) 32
Mva1269I GAATGC 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 110
NlaIII CATG 2 cut(s) 42, 146
NmuCI GTSAC 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 106
NspI RCATGY 1 cut(s) 42
PaeI GCATGC 1 cut(s) 42
PctI GAATGC 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 27
PshBI ATTAAT 1 cut(s) 26
PspEI GGTNACC 1 cut(s) 89
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SaqAI TTAA 1 cut(s) 26
SduI GDGCHC 1 cut(s) 115
SetI ASST 4 cut(s) 64, 91, 96, 160
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 1 cut(s) 63
SphI GCATGC 1 cut(s) 42
Sse9I AATT 2 cut(s) 23, 27
TaaI ACNGT 1 cut(s) 19
TaiI ACGT 1 cut(s) 160
TasI AATT 2 cut(s) 23, 27
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseFI GTSAC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 131
VspI ATTAAT 1 cut(s) 26
XceI RCATGY 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 27
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.