Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

86938921 .. 86939904

Gene Structure 984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGCAGGTCAAGCAGCCTGGACTAGAGATGTCAACTGTCCAAAGTGAATTAGACTTGTCATATGGGCAACGTTATCAAGGGGTGACAATCCCAGAGGCGTATGAACGCCTAATCCTTGATACAATAAAAGGCGATCAACAGCACTTTGTACGCAGAGATGAGTTGAAGGCGGCCTGGGAAATCTTCACACCTCTTCTGCACAGAATTGACAACGGTGAGCTAAAGCCGCTTCCATACAAACCAGGCAGTCGGGGTCCTGCAGAAGCGGATGCTCTGCTAGAGAAAGCTGGTTATGTACAAACACATGGCTATATATGGATCCCTCCCACCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

111

Amino Acids

12.63

Weight (kDa)

5.55

Isoelectric Point (pI)

24.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G6PD_C	PF02781	1 - 98	1.1e-27	Glucose-6-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	170, 227, 266
AclI	AACGTT	1 cut(s)	70
AclWI	GGATC	2 cut(s)	313, 326
AfaI	GTAC	2 cut(s)	150, 297
AgsI	TTSAA	1 cut(s)	166
AjnI	CCWGG	3 cut(s)	16, 173, 241
AloI	GAACNNNNNNTCC	2 cut(s)	96, 128
AluBI	AGCT	2 cut(s)	220, 287
AluI	AGCT	2 cut(s)	220, 287
AlwI	GGATC	2 cut(s)	313, 326
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	2 cut(s)	94, 227
AvaII	GGWCC	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	25
BciT130I	CCWGG	3 cut(s)	18, 175, 243
BfaI	CTAG	2 cut(s)	23, 278
BfmI	CTRYAG	1 cut(s)	258
BisI	GCNGC	3 cut(s)	14, 171, 227
BlsI	GCNGC	3 cut(s)	15, 172, 228
Bme1390I	CCNGG	3 cut(s)	18, 175, 243
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	2 cut(s)	255, 320
BmrFI	CCNGG	3 cut(s)	18, 175, 243
BmsI	GCATC	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	174
BseBI	CCWGG	3 cut(s)	18, 175, 243
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	25
BsgI	GTGCAG	1 cut(s)	182
BshFI	GGCC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	173
Bsp1407I	TGTACA	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	133, 318
BspACI	CCGC	3 cut(s)	170, 227, 266
BspANI	GGCC	1 cut(s)	173
BspLI	GGNNCC	2 cut(s)	255, 320
BspMAI	CTGCAG	1 cut(s)	262
BspPI	GGATC	2 cut(s)	313, 326
BsrGI	TGTACA	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	2 cut(s)	133, 318
Bst2UI	CCWGG	3 cut(s)	18, 175, 243
Bst4CI	ACNGT	2 cut(s)	37, 215
Bst6I	CTCTTC	1 cut(s)	198
BstAUI	TGTACA	1 cut(s)	295
BstF5I	GGATG	1 cut(s)	274
BstKTI	GATC	2 cut(s)	136, 321
BstMBI	GATC	2 cut(s)	133, 318
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 226
BstNI	CCWGG	3 cut(s)	18, 175, 243
BstSCI	CCNGG	3 cut(s)	16, 173, 241
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	149, 296
CviAII	CATG	1 cut(s)	305
CviJI	RGCY	6 cut(s)	16, 173, 220, 226, 287, 309
CviKI_1	RGCY	6 cut(s)	16, 173, 220, 226, 287, 309
CviQI	GTAC	2 cut(s)	149, 296
DpnI	GATC	2 cut(s)	135, 320
DpnII	GATC	2 cut(s)	133, 318
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	254
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRII	CCWGG	3 cut(s)	16, 173, 241
FaeI	CATG	1 cut(s)	308
FaiI	YATR	9 cut(s)	61, 63, 102, 235, 294, 306, 312, 314, 316
FatI	CATG	1 cut(s)	304
FauNDI	CATATG	1 cut(s)	61
Fnu4HI	GCNGC	3 cut(s)	14, 171, 227
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	3 cut(s)	14, 171, 227
FspBI	CTAG	2 cut(s)	23, 278
GluI	GCNGC	3 cut(s)	14, 171, 227
HaeIII	GGCC	1 cut(s)	173
Hin1II	CATG	1 cut(s)	308
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HphI	GGTGA	2 cut(s)	94, 227
Hpy166II	GTNNAC	1 cut(s)	33
Hpy8I	GTNNAC	1 cut(s)	33
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	2 cut(s)	37, 215
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	3 cut(s)	4, 199, 260
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 226
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	1 cut(s)	308
Kzo9I	GATC	2 cut(s)	133, 318
LpnPI	CCDG	9 cut(s)	3, 30, 105, 160, 187, 228, 255, 270, 273
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	2 cut(s)	23, 278
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	2 cut(s)	135, 320
MboI	GATC	2 cut(s)	133, 318
MboII	GAAGA	2 cut(s)	175, 185
MflI	RGATCY	1 cut(s)	318
MluCI	AATT	2 cut(s)	47, 204
MnlI	CCTC	3 cut(s)	88, 201, 333
MspR9I	CCNGG	3 cut(s)	18, 175, 243
MvaI	CCWGG	3 cut(s)	18, 175, 243
MwoI	GCNNNNNNNGC	2 cut(s)	10, 226
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	2 cut(s)	133, 318
NlaIII	CATG	1 cut(s)	308
NlaIV	GGNNCC	2 cut(s)	255, 320
NmuCI	GTSAC	1 cut(s)	82
PkrI	GCNGC	3 cut(s)	15, 172, 228
PpuMI	RGGWCCY	1 cut(s)	254
Psp1406I	AACGTT	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	254
Psp6I	CCWGG	3 cut(s)	16, 173, 241
PspGI	CCWGG	3 cut(s)	16, 173, 241
PspN4I	GGNNCC	2 cut(s)	255, 320
PspPI	GGNCC	1 cut(s)	254
PspPPI	RGGWCCY	1 cut(s)	254
PstI	CTGCAG	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	318
RsaI	GTAC	2 cut(s)	150, 297
RsaNI	GTAC	2 cut(s)	149, 296
SatI	GCNGC	3 cut(s)	14, 171, 227
Sau3AI	GATC	2 cut(s)	133, 318
Sau96I	GGNCC	1 cut(s)	254
ScrFI	CCNGG	3 cut(s)	18, 175, 243
SetI	ASST	6 cut(s)	9, 73, 193, 222, 289, 332
SfaNI	GCATC	1 cut(s)	259
SfcI	CTRYAG	1 cut(s)	258
SinI	GGWCC	1 cut(s)	254
Sse9I	AATT	2 cut(s)	47, 204
SsiI	CCGC	3 cut(s)	170, 227, 266
SspMI	CTAG	2 cut(s)	23, 278
StyD4I	CCNGG	3 cut(s)	16, 173, 241
TaaI	ACNGT	2 cut(s)	37, 215
TaiI	ACGT	1 cut(s)	73
TasI	AATT	2 cut(s)	47, 204
TatI	WGTACW	1 cut(s)	295
TauI	GCSGC	2 cut(s)	173, 229
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	254
XspI	CTAG	2 cut(s)	23, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.