Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

87626202 .. 87626620

Gene Structure 419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAATAACGACCGTGACCGCCGGGATCTCATTACCTGTGGGGCCGCCTCAGGGGTCTGTGCAGCCTTCCGATCCCCTGTGGGTGGTGTACTGTTTGCTCTTGAAGAGGTGGCAACATGGTGGAGGAGTGCCCTTCTGTGGAGAACTTTTTTCAGCACAGCCATTGTGGTGGTGGTGCTCAGGGCTTTTATTGAAATATGCAGCACCGGGGAATGTGGCCTTTTTGGAGAAGGAGGGCTTATCATGTTTGATGTCAGCACTGTAACTGTGACATACCGTTGGATGGATATTGTCCCTGTTGTTGTGATTGGCATTATTGGTGGCGTTTTGGGAAGCTTGTACAATTATTTTCTTCACAAGGTCCTCAGACTGTACAATCTCATAAATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005247 GO:0005253 GO:0005254 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006821 GO:0008150 GO:0008308 GO:0008324 GO:0008509 GO:0009671 GO:0009705 GO:0010035 GO:0010167 GO:0015075 GO:0015077 GO:0015078 GO:0015103 GO:0015108 GO:0015112 GO:0015267 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015296 GO:0015318 GO:0015513 GO:0015672 GO:0015698 GO:0015706 GO:0016020 GO:0022803 GO:0022804 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0031090 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098661 GO:0098662 GO:0098805 GO:1901698 GO:1901700 GO:1902476 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS Voltage_CLC

Protein Analysis

130

Amino Acids

14.38

Weight (kDa)

6.54

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Voltage_CLC	PF00654	3 - 126	3.9e-27	Voltage gated chloride channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	19, 45
AclWI	GGATC	2 cut(s)	33, 66
AfaI	GTAC	3 cut(s)	90, 341, 374
AfiI	CCNNNNNNNGG	4 cut(s)	51, 83, 138, 283
AgsI	TTSAA	2 cut(s)	104, 194
AluBI	AGCT	1 cut(s)	336
AluI	AGCT	1 cut(s)	336
Alw21I	GWGCWC	1 cut(s)	180
AlwI	GGATC	2 cut(s)	33, 66
AoxI	GGCC	2 cut(s)	42, 217
ApeKI	GCWGC	2 cut(s)	62, 201
AspS9I	GGNCC	2 cut(s)	42, 361
AsuC2I	CCSGG	2 cut(s)	23, 208
AvaII	GGWCC	1 cut(s)	361
AxyI	CCTNAGG	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	74, 213
BccI	CCATC	1 cut(s)	277
BcnI	CCSGG	2 cut(s)	23, 208
BisI	GCNGC	3 cut(s)	45, 63, 202
BlsI	GCNGC	3 cut(s)	46, 64, 203
Bme1390I	CCNGG	2 cut(s)	23, 208
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	2 cut(s)	42, 361
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	2 cut(s)	23, 208
Bpu10I	CCTNAGC	1 cut(s)	179
BpuMI	CCSGG	2 cut(s)	23, 208
BsaJI	CCNNGG	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 83, 138, 283
Bse21I	CCTNAGG	1 cut(s)	49
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	288
BseLI	CCNNNNNNNGG	4 cut(s)	51, 83, 138, 283
BseMII	CTCAG	3 cut(s)	63, 193, 379
BseRI	GAGGAG	1 cut(s)	139
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	74, 213
BsgI	GTGCAG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	2 cut(s)	44, 219
BsiEI	CGRYCG	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	22, 207
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	4 cut(s)	51, 83, 138, 283
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	2 cut(s)	44, 219
Bsp1286I	GDGCHC	2 cut(s)	133, 180
Bsp1407I	TGTACA	2 cut(s)	339, 372
Bsp143I	GATC	2 cut(s)	25, 71
BspACI	CCGC	2 cut(s)	19, 45
BspANI	GGCC	2 cut(s)	44, 219
BspCNI	CTCAG	3 cut(s)	62, 192, 378
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	33, 66
BsrGI	TGTACA	2 cut(s)	339, 372
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	2 cut(s)	25, 71
Bst4CI	ACNGT	6 cut(s)	14, 93, 262, 268, 278, 372
Bst6I	CTCTTC	1 cut(s)	99
BstAUI	TGTACA	2 cut(s)	339, 372
BstDEI	CTNAG	3 cut(s)	49, 179, 365
BstF5I	GGATG	1 cut(s)	288
BstKTI	GATC	2 cut(s)	28, 74
BstMBI	GATC	2 cut(s)	25, 71
BstMCI	CGRYCG	1 cut(s)	13
BstSCI	CCNGG	2 cut(s)	21, 206
BstSLI	GKGCMC	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	74, 213
BstX2I	RGATCY	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	25
Bsu36I	CCTNAGG	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	44, 219
BtsCI	GGATG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	258
Cfr13I	GGNCC	2 cut(s)	42, 361
Csp6I	GTAC	3 cut(s)	89, 340, 373
CviAII	CATG	2 cut(s)	117, 244
CviJI	RGCY	7 cut(s)	44, 65, 161, 185, 219, 238, 336
CviKI_1	RGCY	7 cut(s)	44, 65, 161, 185, 219, 238, 336
CviQI	GTAC	3 cut(s)	89, 340, 373
DdeI	CTNAG	3 cut(s)	49, 179, 365
DpnI	GATC	2 cut(s)	27, 73
DpnII	GATC	2 cut(s)	25, 71
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	361
Eco81I	CCTNAGG	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	361
FaeI	CATG	2 cut(s)	120, 247
FaiI	YATR	5 cut(s)	118, 199, 245, 274, 383
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	2 cut(s)	116, 243
Fnu4HI	GCNGC	3 cut(s)	45, 63, 202
FokI	GGATG	1 cut(s)	295
Fsp4HI	GCNGC	3 cut(s)	45, 63, 202
GluI	GCNGC	3 cut(s)	45, 63, 202
HaeIII	GGCC	2 cut(s)	44, 219
HapII	CCGG	2 cut(s)	22, 207
Hin1II	CATG	2 cut(s)	120, 247
HindIII	AAGCTT	1 cut(s)	334
HpaII	CCGG	2 cut(s)	22, 207
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	2 cut(s)	71, 368
Hpy188III	TCNNGA	1 cut(s)	101
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	3 cut(s)	76, 143, 224
HpyCH4III	ACNGT	6 cut(s)	14, 93, 262, 268, 278, 372
HpyCH4V	TGCA	2 cut(s)	62, 201
HpyF3I	CTNAG	3 cut(s)	49, 179, 365
Hsp92II	CATG	2 cut(s)	120, 247
Kzo9I	GATC	2 cut(s)	25, 71
LpnPI	CCDG	7 cut(s)	35, 36, 49, 90, 166, 220, 309
Lsp1109I	GCAGC	2 cut(s)	74, 213
MaeIII	GTNAC	3 cut(s)	14, 262, 268
MalI	GATC	2 cut(s)	27, 73
MboI	GATC	2 cut(s)	25, 71
MboII	GAAGA	2 cut(s)	116, 344
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	2 cut(s)	133, 180
MluCI	AATT	1 cut(s)	343
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	5 cut(s)	58, 100, 117, 227, 374
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	2 cut(s)	22, 207
MspR9I	CCNGG	2 cut(s)	23, 208
NciI	CCSGG	2 cut(s)	23, 208
NdeII	GATC	2 cut(s)	25, 71
NlaIII	CATG	2 cut(s)	120, 247
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	2 cut(s)	14, 268
PkrI	GCNGC	3 cut(s)	46, 64, 203
PpuMI	RGGWCCY	1 cut(s)	361
Psp5II	RGGWCCY	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	2 cut(s)	42, 361
PspPPI	RGGWCCY	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	3 cut(s)	90, 341, 374
RsaNI	GTAC	3 cut(s)	89, 340, 373
RseI	CAYNNNNRTG	1 cut(s)	167
SatI	GCNGC	3 cut(s)	45, 63, 202
Sau3AI	GATC	2 cut(s)	25, 71
Sau96I	GGNCC	2 cut(s)	42, 361
ScrFI	CCNGG	2 cut(s)	23, 208
SduI	GDGCHC	2 cut(s)	133, 180
SetI	ASST	4 cut(s)	38, 111, 338, 363
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	1 cut(s)	343
SsiI	CCGC	2 cut(s)	19, 45
StyD4I	CCNGG	2 cut(s)	21, 206
TaaI	ACNGT	6 cut(s)	14, 93, 262, 268, 278, 372
TasI	AATT	1 cut(s)	343
TatI	WGTACW	3 cut(s)	88, 339, 372
TauI	GCSGC	1 cut(s)	47
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	2 cut(s)	14, 268
TseI	GCWGC	2 cut(s)	62, 201
Tsp45I	GTSAC	2 cut(s)	14, 268
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.