RchiOBHm_Chr2g0175671

Protein transport protein Sec61 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
87750714 .. 87751066
353 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 249 bp
ATGGACGCCATAGATTCAGTGTTTGAGCCCCTGAGAGAATTCTCCAAGGACAGCGTTCGCCTGGTCAAACGCTGCCACAAACCCGACCGGAAAGAATCTCAGATTGATGCCGTGCGTTTTGCATGCAACAGAATTCACACAAAGGTGGCGGTACGTACGGCCATCGGGTTTGTGGTGATGGGATTCGTTGGCTTCTTTGTGAAGCACATCTTCATTCCGATCAACAACATCAACGTCGGAGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
SecE

Protein Analysis

82

Amino Acids

9.27

Weight (kDa)

9.78

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 149
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 2 cut(s) 38, 132
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 2 cut(s) 153, 157
AjnI CCWGG 1 cut(s) 60
AleI CACNNNNGTG 1 cut(s) 143
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 2 cut(s) 72, 242
ApoI RAATTY 2 cut(s) 38, 132
AsuHPI GGTGA 1 cut(s) 187
BanII GRGCYC 1 cut(s) 30
BbvI GCAGC 2 cut(s) 59, 229
BccI CCATC 2 cut(s) 170, 172
BceAI ACGGC 2 cut(s) 95, 174
BciT130I CCWGG 1 cut(s) 62
BisI GCNGC 2 cut(s) 73, 243
BlsI GCNGC 2 cut(s) 74, 244
Bme1390I CCNGG 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 62
BmsI GCATC 1 cut(s) 97
BsaAI YACGTR 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 87
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 23, 113
BseXI GCAGC 2 cut(s) 59, 229
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 161
BsiEI CGRYCG 1 cut(s) 88
BsiSI CCGG 1 cut(s) 88
BsiWI CGTACG 1 cut(s) 155
BsnI GGCC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 219
BspACI CCGC 1 cut(s) 149
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 2 cut(s) 24, 112
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 1 cut(s) 219
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 6
BstBAI YACGTR 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 3 cut(s) 32, 99, 246
BstKTI GATC 1 cut(s) 222
BstMBI GATC 1 cut(s) 219
BstMCI CGRYCG 1 cut(s) 88
BstNI CCWGG 1 cut(s) 62
BstNSI RCATGY 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 60
BstSNI TACGTA 1 cut(s) 155
BstV1I GCAGC 2 cut(s) 59, 229
BsuRI GGCC 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 124
CseI GACGC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 152, 156
CviAII CATG 1 cut(s) 123
CviJI RGCY 4 cut(s) 28, 161, 192, 242
CviKI_1 RGCY 4 cut(s) 28, 161, 192, 242
CviQI GTAC 2 cut(s) 152, 156
DdeI CTNAG 3 cut(s) 32, 99, 246
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
EaeI YGGCCR 1 cut(s) 159
Eco105I TACGTA 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 30
EcoRI GAATTC 2 cut(s) 38, 132
EcoRII CCWGG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 126
FaiI YATR 2 cut(s) 11, 124
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FatI CATG 1 cut(s) 122
Fnu4HI GCNGC 2 cut(s) 73, 243
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 2 cut(s) 73, 243
GluI GCNGC 2 cut(s) 73, 243
HaeIII GGCC 1 cut(s) 161
HapII CCGG 1 cut(s) 88
HgaI GACGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 1 cut(s) 126
HinfI GANTC 3 cut(s) 14, 95, 183
HpaII CCGG 1 cut(s) 88
HphI GGTGA 1 cut(s) 187
Hpy188I TCNGA 3 cut(s) 102, 219, 239
Hpy99I CGWCG 1 cut(s) 239
HpyCH4IV ACGT 2 cut(s) 154, 234
HpyCH4V TGCA 2 cut(s) 122, 126
HpyF3I CTNAG 3 cut(s) 32, 99, 246
HpySE526I ACGT 2 cut(s) 154, 234
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 1 cut(s) 126
Kzo9I GATC 1 cut(s) 219
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 4 cut(s) 44, 47, 74, 101
Lsp1109I GCAGC 2 cut(s) 59, 229
LweI GCATC 1 cut(s) 97
MaeII ACGT 2 cut(s) 154, 234
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MboII GAAGA 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 2 cut(s) 38, 132
MmeI TCCRAC 1 cut(s) 217
MslI CAYNNNNRTG 1 cut(s) 143
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
NdeII GATC 1 cut(s) 219
NlaIII CATG 1 cut(s) 126
NspI RCATGY 1 cut(s) 126
OliI CACNNNNGTG 1 cut(s) 143
PaeI GCATGC 1 cut(s) 126
PfeI GAWTC 3 cut(s) 14, 95, 183
Pfl23II CGTACG 1 cut(s) 155
PkrI GCNGC 2 cut(s) 74, 244
Ppu21I YACGTR 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspLI CGTACG 1 cut(s) 155
RsaI GTAC 2 cut(s) 153, 157
RsaNI GTAC 2 cut(s) 152, 156
RseI CAYNNNNRTG 1 cut(s) 143
SatI GCNGC 2 cut(s) 73, 243
Sau3AI GATC 1 cut(s) 219
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 1 cut(s) 30
SetI ASST 4 cut(s) 147, 157, 237, 244
SfaNI GCATC 1 cut(s) 97
SgeI CNNG 9 cut(s) 43, 58, 73, 74, 95, 100, 124, 135, 178
SmiMI CAYNNNNRTG 1 cut(s) 143
SnaBI TACGTA 1 cut(s) 155
SphI GCATGC 1 cut(s) 126
Sse9I AATT 2 cut(s) 38, 132
SsiI CCGC 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 45
TaiI ACGT 2 cut(s) 157, 237
TasI AATT 2 cut(s) 38, 132
TfiI GAWTC 3 cut(s) 14, 95, 183
TscAI CASTG 1 cut(s) 24
TseI GCWGC 2 cut(s) 72, 242
TspDTI ATGAA 1 cut(s) 202
TspRI CASTG 1 cut(s) 24
XapI RAATTY 2 cut(s) 38, 132
XceI RCATGY 1 cut(s) 126
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.