Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

79291 .. 79587

Gene Structure 297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTACTTGGAAGTGAAGCTGCGGCTGGTGCCGATCATCAACTCAATAGGAAACACAAAGCTTGAAGTTTCAAATAATTCCCAAAAAATATATGGACTCCCGCAGTGTATTCAGGAGTTGTCGGAGAAAGACTGTAATCACTGCTGGGTATCAGCTTTTGGGTATATGCCATGGTGTTGTTACGGGAAAGCAGGTGGGAGAGTTAGTGTAAGATCCGTAGGTTTCGAGGACGAAATTTTTATAAGGTGGGAGATTATTATGCCCGTACCTAAACGTACCTGTTTACTGATCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

98

Amino Acids

11.24

Weight (kDa)

8.24

Isoelectric Point (pI)

57.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	22 - 68	7.2e-06	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	242
AarI	CACCTGC	1 cut(s)	182
Acc36I	ACCTGC	1 cut(s)	182
AccB1I	GGYRCC	1 cut(s)	28
AciI	CCGC	2 cut(s)	22, 101
AclWI	GGATC	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	234
AfaI	GTAC	3 cut(s)	5, 267, 277
AgsI	TTSAA	2 cut(s)	65, 72
AluBI	AGCT	3 cut(s)	19, 61, 155
AluI	AGCT	3 cut(s)	19, 61, 155
AlwI	GGATC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	6
BclI	TGATCA	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	182
BisI	GCNGC	2 cut(s)	20, 23
BlsI	GCNGC	2 cut(s)	21, 24
BmiI	GGNNCC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	190, 220
BseDI	CCNNGG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	6
BseYI	CCCAGC	1 cut(s)	144
BshNI	GGYRCC	1 cut(s)	28
Bsp143I	GATC	3 cut(s)	33, 212, 288
Bsp19I	CCATGG	1 cut(s)	170
BspACI	CCGC	2 cut(s)	22, 101
BspLI	GGNNCC	1 cut(s)	30
BspMI	ACCTGC	1 cut(s)	182
BspPI	GGATC	1 cut(s)	207
BspT107I	GGYRCC	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	3 cut(s)	33, 212, 288
BssT1I	CCWWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	134
BstDSI	CCRYGG	1 cut(s)	170
BstKTI	GATC	3 cut(s)	36, 215, 291
BstMBI	GATC	3 cut(s)	33, 212, 288
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	6
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BtgI	CCRYGG	1 cut(s)	170
BtsI	GCAGTG	2 cut(s)	110, 139
BtsIMutI	CAGTG	2 cut(s)	110, 139
BveI	ACCTGC	1 cut(s)	182
Csp6I	GTAC	3 cut(s)	4, 266, 276
CviAII	CATG	1 cut(s)	171
CviJI	RGCY	4 cut(s)	19, 25, 61, 155
CviKI_1	RGCY	4 cut(s)	19, 25, 61, 155
CviQI	GTAC	3 cut(s)	4, 266, 276
DpnI	GATC	3 cut(s)	35, 214, 290
DpnII	GATC	3 cut(s)	33, 212, 288
Eco130I	CCWWGG	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	170
FaeI	CATG	1 cut(s)	174
FaiI	YATR	7 cut(s)	91, 93, 165, 167, 172, 242, 260
FatI	CATG	1 cut(s)	170
FauI	CCCGC	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	288
Fnu4HI	GCNGC	2 cut(s)	20, 23
Fsp4HI	GCNGC	2 cut(s)	20, 23
GluI	GCNGC	2 cut(s)	20, 23
GsaI	CCCAGC	1 cut(s)	148
Hin1II	CATG	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	1 cut(s)	96
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	284
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	1 cut(s)	274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	1 cut(s)	174
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	3 cut(s)	33, 212, 288
LpnPI	CCDG	5 cut(s)	11, 98, 130, 177, 292
Lsp1109I	GCAGC	1 cut(s)	6
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	3 cut(s)	35, 214, 290
MboI	GATC	3 cut(s)	33, 212, 288
MflI	RGATCY	1 cut(s)	212
MluCI	AATT	2 cut(s)	76, 234
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	28
NcoI	CCATGG	1 cut(s)	170
NdeII	GATC	3 cut(s)	33, 212, 288
NlaIII	CATG	1 cut(s)	174
NlaIV	GGNNCC	1 cut(s)	30
PaqCI	CACCTGC	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	21, 24
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
PsiI	TTATAA	1 cut(s)	242
PspFI	CCCAGC	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	212
RsaI	GTAC	3 cut(s)	5, 267, 277
RsaNI	GTAC	3 cut(s)	4, 266, 276
SatI	GCNGC	2 cut(s)	20, 23
Sau3AI	GATC	3 cut(s)	33, 212, 288
SchI	GAGTC	1 cut(s)	90
SetI	ASST	9 cut(s)	21, 63, 157, 196, 223, 248, 271, 277, 281
Sse9I	AATT	2 cut(s)	76, 234
SsiI	CCGC	2 cut(s)	22, 101
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	1 cut(s)	225
TasI	AATT	2 cut(s)	76, 234
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	25
TscAI	CASTG	2 cut(s)	110, 146
TseI	GCWGC	1 cut(s)	19
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	2 cut(s)	110, 146
XapI	RAATTY	1 cut(s)	234
XcmI	CCANNNNNNNNNTGG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.