RchiOBHm_Chr1g0313101

Uncharacterized integral membrane protein (DUF2301)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
219239 .. 220105
867 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 309 bp
ATGCTTGGCTCAACCAGCTGGAGAGGATTGGTTCAGTATGTTGATGATAACCCAATTGCTGTTTGGTTTGTTGGTCCTTTGTTTGCAGCGCTCATAGGACTGGTTTTCAAGATATTGGAGACTTTCTATGAATATGGGGACAACATCATTGCTGGTAATAAGGTGCAAGTATGGGGCATGAGTTCTTCTTCTTGTTATCGAGGATTAGTGAGTTCACTCTATCTTTTGAAGGAGAGGTTTATGTGTTTTTTGCTATTACGCCCCAGAAGAAAGTACTCCTTAAGACGAGAAGAGGATTTGTTCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

11.8

Weight (kDa)

9.03

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2301 PF10063 8 - 38 1.1e-06 Uncharacterized integral membrane protein (DUF2301)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 275
AfeI AGCGCT 1 cut(s) 90
AflII CTTAAG 1 cut(s) 280
AgsI TTSAA 2 cut(s) 109, 229
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 113
Aor51HI AGCGCT 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 86
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 74
AvaII GGWCC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 113
BfoI RGCGCY 1 cut(s) 92
BfrI CTTAAG 1 cut(s) 280
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmcAI AGTACT 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 74
BpmI CTGGAG 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 147
BseMI GCAATG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 98
BslFI GGGAC 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 152
BspTI CTTAAG 1 cut(s) 280
BsrDI GCAATG 1 cut(s) 147
BsrI ACTGG 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 285
BstAFI CTTAAG 1 cut(s) 280
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 113
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 98
CfoI GCGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 274
CviAII CATG 1 cut(s) 178
CviJI RGCY 2 cut(s) 9, 18
CviKI_1 RGCY 2 cut(s) 9, 18
CviQI GTAC 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 74
Eco47III AGCGCT 1 cut(s) 90
FaeI CATG 1 cut(s) 181
FaiI YATR 8 cut(s) 39, 95, 129, 135, 172, 179, 242, 307
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 152
FatI CATG 1 cut(s) 177
Fnu4HI GCNGC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 87
GlaI GCGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 40
HaeII RGCGCY 1 cut(s) 92
HhaI GCGC 1 cut(s) 91
Hin1II CATG 1 cut(s) 181
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 215
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 86, 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
Hsp92II CATG 1 cut(s) 181
HspAI GCGC 1 cut(s) 89
LpnPI CCDG 5 cut(s) 4, 28, 86, 138, 277
Lsp1109I GCAGC 1 cut(s) 98
MboII GAAGA 4 cut(s) 177, 180, 279, 302
MfeI CAATTG 1 cut(s) 54
MluCI AATT 1 cut(s) 54
MnlI CCTC 4 cut(s) 17, 194, 228, 286
MseI TTAA 1 cut(s) 281
MspA1I CMGCKG 1 cut(s) 18
MspCI CTTAAG 1 cut(s) 280
MunI CAATTG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 15
NlaIII CATG 1 cut(s) 181
PkrI GCNGC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 18
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 1 cut(s) 87
Sau96I GGNCC 1 cut(s) 74
ScaI AGTACT 1 cut(s) 275
SetI ASST 3 cut(s) 20, 165, 239
SinI GGWCC 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 1 cut(s) 54
TaqI TCGA 1 cut(s) 199
TasI AATT 1 cut(s) 54
TatI WGTACW 1 cut(s) 273
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 144
Vha464I CTTAAG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 74
XcmI CCANNNNNNNNNTGG 1 cut(s) 60
ZrmI AGTACT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.