RchiOBHm_Chr1g0313321

Callose synthase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
431427 .. 432016
590 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 324 bp
ATGCAGAGTTTTTATCGAGATTACTACAAAAAATACATTCAAGCTTTGAACAGTACTGCTGATAAACCTGATCGTGCACAACTGACAAAGGCATACAAAACTGCTGCTGTTTTGTTTGAGGTTTTGAAGGCTGTCAATCAGACAGAGGCTGTTGAAGTCGCTGAGGAGATTTTGGAAGCCCACACTAAGGTTGAAGAAAAACAACAGATATATCCACCTTACAATATTCTTCCTCTTGATCCTGATAGTCGAAATCAGGCAATCATGAGATGTCCGGAGGTTTTAACAATTTCAATTTATAAAGTCGAAGATTTATGTCTTTAG
Functional Annotation

Protein Analysis

107

Amino Acids

12.37

Weight (kDa)

5.15

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
AccIII TCCGGA 1 cut(s) 274
AclWI GGATC 1 cut(s) 233
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 6 cut(s) 41, 49, 127, 155, 194, 294
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
Alw21I GWGCWC 1 cut(s) 79
Alw44I GTGCAC 1 cut(s) 75
AlwI GGATC 1 cut(s) 233
AlwNI CAGNNNCTG 1 cut(s) 149
Aor13HI TCCGGA 1 cut(s) 274
ApaLI GTGCAC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 104
BaeGI GKGCMC 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 79
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 91
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
BmcAI AGTACT 1 cut(s) 55
Bpu10I CCTNAGC 1 cut(s) 162
BsaWI WCCGGW 1 cut(s) 274
Bsc4I CCNNNNNNNGG 1 cut(s) 187
BseAI TCCGGA 1 cut(s) 274
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 153
BseRI GAGGAG 1 cut(s) 179
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 79
Bsp13I TCCGGA 1 cut(s) 274
Bsp143I GATC 2 cut(s) 70, 238
BspCNI CTCAG 1 cut(s) 154
BspEI TCCGGA 1 cut(s) 274
BspHI TCATGA 1 cut(s) 264
BspPI GGATC 1 cut(s) 233
BssMI GATC 2 cut(s) 70, 238
Bst4CI ACNGT 1 cut(s) 53
BstDEI CTNAG 2 cut(s) 162, 186
BstKTI GATC 2 cut(s) 73, 241
BstMBI GATC 2 cut(s) 70, 238
BstSLI GKGCMC 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 91
CaiI CAGNNNCTG 1 cut(s) 149
CciI TCATGA 1 cut(s) 264
Csp6I GTAC 1 cut(s) 54
CviAII CATG 1 cut(s) 265
CviJI RGCY 4 cut(s) 44, 131, 149, 179
CviKI_1 RGCY 4 cut(s) 44, 131, 149, 179
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 2 cut(s) 162, 186
DpnI GATC 2 cut(s) 72, 240
DpnII GATC 2 cut(s) 70, 238
FaeI CATG 1 cut(s) 268
FaiI YATR 5 cut(s) 94, 211, 266, 300, 316
FatI CATG 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 105
HapII CCGG 1 cut(s) 275
Hin1II CATG 1 cut(s) 268
HindIII AAGCTT 1 cut(s) 42
HpaII CCGG 1 cut(s) 275
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 1 cut(s) 141
Hpy188III TCNNGA 5 cut(s) 17, 236, 242, 265, 275
Hpy8I GTNNAC 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 2 cut(s) 4, 77
HpyF3I CTNAG 2 cut(s) 162, 186
Hsp92II CATG 1 cut(s) 268
Kpn2I TCCGGA 1 cut(s) 274
Kzo9I GATC 2 cut(s) 70, 238
LpnPI CCDG 4 cut(s) 81, 242, 255, 288
Lsp1109I GCAGC 1 cut(s) 91
MalI GATC 2 cut(s) 72, 240
MboI GATC 2 cut(s) 70, 238
MboII GAAGA 3 cut(s) 206, 221, 320
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 2 cut(s) 288, 294
MnlI CCTC 5 cut(s) 112, 139, 157, 243, 271
MroI TCCGGA 1 cut(s) 274
MseI TTAA 1 cut(s) 284
MspI CCGG 1 cut(s) 275
NdeII GATC 2 cut(s) 70, 238
NlaIII CATG 1 cut(s) 268
PagI TCATGA 1 cut(s) 264
PkrI GCNGC 1 cut(s) 106
PsiI TTATAA 1 cut(s) 300
PstNI CAGNNNCTG 1 cut(s) 149
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 284
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 2 cut(s) 70, 238
ScaI AGTACT 1 cut(s) 55
SduI GDGCHC 1 cut(s) 79
SetI ASST 6 cut(s) 46, 70, 123, 192, 220, 282
SgeI CNNG 9 cut(s) 29, 53, 80, 86, 248, 254, 269, 277, 287
Sse9I AATT 2 cut(s) 288, 294
SspI AATATT 1 cut(s) 226
TaaI ACNGT 1 cut(s) 53
TaqI TCGA 3 cut(s) 16, 250, 306
TasI AATT 2 cut(s) 288, 294
TatI WGTACW 1 cut(s) 53
Tru1I TTAA 1 cut(s) 284
Tru9I TTAA 1 cut(s) 284
TseI GCWGC 1 cut(s) 104
VneI GTGCAC 1 cut(s) 75
ZrmI AGTACT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.