RchiOBHm_Chr1g0314021

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
1277051 .. 1280636
3586 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 129 bp
ATGACTCAAGACGTGGAGATGAAAGAGGTCCCGGCCCCTTCCAATTCAGTCTATTCTACTACTCCCACAACTCTCCACCGACGTACTGAGCCCTCGAGCGAGGAGGACATAGACAGGCAGCAGGGTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

42

Amino Acids

4.75

Weight (kDa)

4.55

Isoelectric Point (pI)

84.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 85
AjiI CACGTC 1 cut(s) 13
Ama87I CYCGRG 1 cut(s) 94
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 118
AspS9I GGNCC 2 cut(s) 28, 34
AsuC2I CCSGG 1 cut(s) 32
AvaI CYCGRG 1 cut(s) 94
AvaII GGWCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 93
BcnI CCSGG 1 cut(s) 32
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 28
BmeT110I CYCGRG 1 cut(s) 94
BmgBI CACGTC 1 cut(s) 13
BmgT120I GGNCC 2 cut(s) 28, 34
BmiI GGNNCC 2 cut(s) 30, 36
BmrFI CCNGG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 32
BseMII CTCAG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 116
BshFI GGCC 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 94
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 14
BsnI GGCC 1 cut(s) 35
BsoBI CYCGRG 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 93
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 2 cut(s) 30, 36
BstDEI CTNAG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 30
BsuRI GGCC 1 cut(s) 35
BtrI CACGTC 1 cut(s) 13
Cfr13I GGNCC 2 cut(s) 28, 34
Csp6I GTAC 1 cut(s) 84
CviJI RGCY 2 cut(s) 35, 91
CviKI_1 RGCY 2 cut(s) 35, 91
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 28
Eco88I CYCGRG 1 cut(s) 94
EcoO109I RGGNCCY 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 93
FaiI YATR 1 cut(s) 110
FaqI GGGAC 1 cut(s) 14
Fnu4HI GCNGC 1 cut(s) 119
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 119
GluI GCNGC 1 cut(s) 119
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 32
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 32
Hpy188III TCNNGA 1 cut(s) 8
Hpy99I CGWCG 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 48
HpyCH4IV ACGT 2 cut(s) 12, 82
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 2 cut(s) 12, 82
LpnPI CCDG 3 cut(s) 45, 100, 107
MaeII ACGT 2 cut(s) 12, 82
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 1 cut(s) 43
MnlI CCTC 4 cut(s) 19, 94, 97, 103
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 32
NciI CCSGG 1 cut(s) 32
NlaIV GGNNCC 2 cut(s) 30, 36
PaeR7I CTCGAG 1 cut(s) 94
PkrI GCNGC 1 cut(s) 120
PpuMI RGGWCCY 1 cut(s) 28
Psp5II RGGWCCY 1 cut(s) 28
PspN4I GGNNCC 2 cut(s) 30, 36
PspPI GGNCC 2 cut(s) 28, 34
PspPPI RGGWCCY 1 cut(s) 28
PspXI VCTCGAGB 1 cut(s) 94
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
SatI GCNGC 1 cut(s) 119
Sau96I GGNCC 2 cut(s) 28, 34
ScrFI CCNGG 1 cut(s) 32
SduI GDGCHC 1 cut(s) 93
SetI ASST 3 cut(s) 15, 30, 85
Sfr274I CTCGAG 1 cut(s) 94
SgeI CNNG 7 cut(s) 20, 25, 43, 44, 106, 108, 112
SinI GGWCC 1 cut(s) 28
SlaI CTCGAG 1 cut(s) 94
SmlI CTYRAG 2 cut(s) 6, 94
SmoI CTYRAG 2 cut(s) 6, 94
Sse9I AATT 1 cut(s) 43
StyD4I CCNGG 1 cut(s) 30
TaiI ACGT 2 cut(s) 15, 85
TaqI TCGA 1 cut(s) 95
TasI AATT 1 cut(s) 43
TseI GCWGC 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 28
XhoI CTCGAG 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.