Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4144635 .. 4144979

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGTATGAAGAAAAGAATCGCTTGGTTATCAATCCTTGTGTCAAGGAGATTGAAGGCTGGAATGCTAGACTTCTTCCGTCAAGACAGTTTGAATACATTGTGTTGACAACATCTGCTGGAATCATGGATCATGAGAAAGCTAGGAGAAAGAATGTTGGTGGCAAAGTTCTCGGTTTATTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0009506 GO:0015935 GO:0016020 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8

Protein Analysis

61

Amino Acids

7.08

Weight (kDa)

9.3

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8	PF00410	30 - 61	3e-07	Ribosomal protein S8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	135
AgsI	TTSAA	2 cut(s)	53, 92
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
AlwI	GGATC	1 cut(s)	135
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BfaI	CTAG	2 cut(s)	66, 141
BsmI	GAATGC	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	127
BspHI	TCATGA	1 cut(s)	130
BspPI	GGATC	1 cut(s)	135
BssMI	GATC	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	87
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
CciI	TCATGA	1 cut(s)	130
CviAII	CATG	2 cut(s)	124, 131
CviJI	RGCY	2 cut(s)	57, 140
CviKI_1	RGCY	2 cut(s)	57, 140
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
FaeI	CATG	2 cut(s)	127, 134
FaiI	YATR	3 cut(s)	6, 125, 132
FalI	AAGNNNNNCTT	1 cut(s)	37
FatI	CATG	2 cut(s)	123, 130
FspBI	CTAG	2 cut(s)	66, 141
Hin1II	CATG	2 cut(s)	127, 134
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HinfI	GANTC	2 cut(s)	16, 120
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188III	TCNNGA	2 cut(s)	81, 131
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	127, 134
Kzo9I	GATC	1 cut(s)	127
LpnPI	CCDG	2 cut(s)	43, 102
MaeI	CTAG	2 cut(s)	66, 141
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	2 cut(s)	20, 65
Mva1269I	GAATGC	1 cut(s)	67
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	2 cut(s)	127, 134
PagI	TCATGA	1 cut(s)	130
PctI	GAATGC	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	16, 120
Sau3AI	GATC	1 cut(s)	127
SetI	ASST	1 cut(s)	142
SspMI	CTAG	2 cut(s)	66, 141
TaaI	ACNGT	1 cut(s)	87
TfiI	GAWTC	2 cut(s)	16, 120
TspDTI	ATGAA	1 cut(s)	21
TspGWI	ACGGA	1 cut(s)	66
XspI	CTAG	2 cut(s)	66, 141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.