RchiOBHm_Chr1g0316741

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
4262736 .. 4263340
605 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 444 bp
ATGGGAAGAGGATGCCAAACTCTTTTCGACTTTGTGAATAATCAGGTGGGAGTTGGTGTGTTCTTTATCTTTCAGATTGTAGTTTGTCTTTCATCTTTTTTTTTTTTGTTTTGGCCCTTTGGTAGTACTCAATTGAAGAAAATTAATTTTTACGATCATGTGACCTTTTTGATTGTGCAGAAGGATGGTACATATATGTTTAACTTAGACAGCATGATTCCAAAACTTTGTCAAATAGCTCAAGAAATGAGGGAGGATGGGACAGCAATGAATTTGCGGGCAGCTGGGCTTCAAGCTCTTTCATCAATGGTAATCTATCAACATTCTCTTTTTGTAATTACTTCATGCTGTGACCCTTGTTTTGCATATGTTATCAAAATTTTGATAATTCTGACTTTGTTACCAACCTATGAAAGTTTTGTTGGAAATGTCATACATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.72

Weight (kDa)

6.79

Isoelectric Point (pI)

27.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 277
AcsI RAATTY 2 cut(s) 271, 378
AfaI GTAC 2 cut(s) 127, 190
AgsI TTSAA 2 cut(s) 136, 293
AjuI GAANNNNNNNTTGG 2 cut(s) 405, 437
AluBI AGCT 3 cut(s) 239, 284, 296
AluI AGCT 3 cut(s) 239, 284, 296
AoxI GGCC 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 2 cut(s) 271, 378
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AseI ATTAAT 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 293
BccI CCATC 2 cut(s) 179, 251
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
BmcAI AGTACT 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 114
BmsI GCATC 1 cut(s) 2
BpuEI CTTGAG 1 cut(s) 225
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bse3DI GCAATG 1 cut(s) 273
BseGI GGATG 3 cut(s) 17, 190, 262
BseMI GCAATG 1 cut(s) 273
BseXI GCAGC 1 cut(s) 293
BseYI CCCAGC 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 197
BshFI GGCC 1 cut(s) 115
BslFI GGGAC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 274
BsnI GGCC 1 cut(s) 115
Bsp143I GATC 1 cut(s) 154
BspACI CCGC 1 cut(s) 277
BspANI GGCC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 273
BssMI GATC 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 1 cut(s) 205
BstF5I GGATG 3 cut(s) 17, 190, 262
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 293
BsuRI GGCC 1 cut(s) 115
BtsCI GGATG 3 cut(s) 17, 190, 262
Cac8I GCNNGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 114
Csp6I GTAC 2 cut(s) 126, 189
CviAII CATG 3 cut(s) 158, 214, 345
CviJI RGCY 5 cut(s) 115, 239, 284, 289, 296
CviKI_1 RGCY 5 cut(s) 115, 239, 284, 289, 296
CviQI GTAC 2 cut(s) 126, 189
DdeI CTNAG 1 cut(s) 205
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
FaeI CATG 3 cut(s) 161, 217, 348
FaqI GGGAC 1 cut(s) 274
FatI CATG 3 cut(s) 157, 213, 344
FauI CCCGC 1 cut(s) 270
FauNDI CATATG 1 cut(s) 367
Fnu4HI GCNGC 1 cut(s) 282
FokI GGATG 3 cut(s) 24, 197, 269
Fsp4HI GCNGC 1 cut(s) 282
GluI GCNGC 1 cut(s) 282
GsaI CCCAGC 1 cut(s) 288
HaeIII GGCC 1 cut(s) 115
Hin1II CATG 3 cut(s) 161, 217, 348
HinfI GANTC 1 cut(s) 217
Hpy188I TCNGA 2 cut(s) 75, 393
Hpy188III TCNNGA 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 175
HpyCH4V TGCA 2 cut(s) 178, 365
HpyF3I CTNAG 1 cut(s) 205
Hsp92II CATG 3 cut(s) 161, 217, 348
Kzo9I GATC 1 cut(s) 154
LpnPI CCDG 2 cut(s) 29, 270
Lsp1109I GCAGC 1 cut(s) 293
LweI GCATC 1 cut(s) 2
MaeIII GTNAC 3 cut(s) 160, 350, 399
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 2 cut(s) 18, 148
MfeI CAATTG 1 cut(s) 131
MluCI AATT 7 cut(s) 131, 141, 145, 271, 336, 378, 387
MmeI TCCRAC 1 cut(s) 403
MnlI CCTC 2 cut(s) 243, 247
MseI TTAA 2 cut(s) 144, 201
MspA1I CMGCKG 1 cut(s) 284
MunI CAATTG 1 cut(s) 131
NdeI CATATG 1 cut(s) 367
NdeII GATC 1 cut(s) 154
NlaIII CATG 3 cut(s) 161, 217, 348
NmuCI GTSAC 2 cut(s) 160, 350
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 1 cut(s) 283
PshBI ATTAAT 1 cut(s) 144
PspFI CCCAGC 1 cut(s) 284
PspPI GGNCC 1 cut(s) 114
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 2 cut(s) 127, 190
RsaNI GTAC 2 cut(s) 126, 189
SaqAI TTAA 2 cut(s) 144, 201
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 1 cut(s) 114
ScaI AGTACT 1 cut(s) 127
SetI ASST 6 cut(s) 48, 167, 241, 286, 298, 410
SfaNI GCATC 1 cut(s) 2
SgeI CNNG 9 cut(s) 56, 170, 226, 254, 290, 297, 305, 357, 369
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
Sse9I AATT 7 cut(s) 131, 141, 145, 271, 336, 378, 387
SsiI CCGC 1 cut(s) 277
TaqI TCGA 1 cut(s) 27
TasI AATT 7 cut(s) 131, 141, 145, 271, 336, 378, 387
TatI WGTACW 1 cut(s) 125
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 2 cut(s) 144, 201
Tru9I TTAA 2 cut(s) 144, 201
TseFI GTSAC 2 cut(s) 160, 350
TseI GCWGC 1 cut(s) 281
Tsp45I GTSAC 2 cut(s) 160, 350
TspDTI ATGAA 5 cut(s) 81, 284, 291, 333, 426
VspI ATTAAT 1 cut(s) 144
XapI RAATTY 2 cut(s) 271, 378
ZrmI AGTACT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.