RchiOBHm_Chr1g0318631

Structure-specific endonuclease subunit

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
6205282 .. 6206930
1649 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 471 bp
ATGATATTGTGGCCACCAATGAAGAAGCCATCATTTTTTCTTGAGTTCAGACCATTTTGGACATTTGATTGTTTAGTACTCCAGCTGTTAAATTATTTTGGCCAACAAAGGTACTCATATTTTGGAGTATCAGATTTTATTGTTTTGGTTCCTTTGATGACAAAGAGACAAACTCTTTTTCATGCAATTGCTAATATGTCCCTTATATCTTTCTATATTGGGCATGTGATGGAATGGCTTAAAGCTGAGCTCCACATGTTCAACAGAGGCAGACCAACATGTGCATTTGAATCAAAATGGAAAACTTTATCAAGGAGTTTGCCTCGCAAAAGAAAGGACGATAACAAGGTAGAGCAAGTAAATGATTTGTCGCTTCCTCTACTACAACATAGGCAAGCAGCTCTAAATAGAGTTAAAGGTATATTTGATTGTACTCACTTAGAAATTGACTGGAAACTGAACCCTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

156

Amino Acids

18.6

Weight (kDa)

9.64

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 469
AcoI YGGCCR 2 cut(s) 11, 100
AfaI GTAC 3 cut(s) 78, 113, 433
AflIII ACRYGT 2 cut(s) 255, 278
AgsI TTSAA 2 cut(s) 262, 290
AluBI AGCT 4 cut(s) 85, 245, 250, 401
AluI AGCT 4 cut(s) 85, 245, 250, 401
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 160
AoxI GGCC 2 cut(s) 11, 100
ApeKI GCWGC 1 cut(s) 398
BalI TGGCCA 2 cut(s) 13, 102
BanII GRGCYC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 410
BccI CCATC 2 cut(s) 37, 223
BcoDI GTCTC 1 cut(s) 160
BisI GCNGC 1 cut(s) 399
BlpI GCTNAGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 400
BmcAI AGTACT 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 150
BplI GAGNNNNNCTC 4 cut(s) 157, 189, 307, 339
BpmI CTGGAG 1 cut(s) 65
Bpu1102I GCTNAGC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 455
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 455
BseXI GCAGC 1 cut(s) 410
BshFI GGCC 2 cut(s) 13, 102
BsiHKAI GWGCWC 1 cut(s) 252
BslFI GGGAC 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 2 cut(s) 13, 102
Bsp1286I GDGCHC 1 cut(s) 252
Bsp1720I GCTNAGC 1 cut(s) 246
BspANI GGCC 2 cut(s) 13, 102
BspCNI CTCAG 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 150
BsrI ACTGG 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 2 cut(s) 246, 439
BstMAI GTCTC 1 cut(s) 160
BstNSI RCATGY 3 cut(s) 227, 259, 282
BstV1I GCAGC 1 cut(s) 410
BsuRI GGCC 2 cut(s) 13, 102
Cac8I GCNNGC 1 cut(s) 396
Csp6I GTAC 3 cut(s) 77, 112, 432
CviAII CATG 4 cut(s) 182, 224, 256, 279
CviJI RGCY 8 cut(s) 13, 28, 85, 102, 238, 245, 250, 401
CviKI_1 RGCY 8 cut(s) 13, 28, 85, 102, 238, 245, 250, 401
CviQI GTAC 3 cut(s) 77, 112, 432
DdeI CTNAG 2 cut(s) 246, 439
EaeI YGGCCR 2 cut(s) 11, 100
Ecl136II GAGCTC 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 252
Eco53kI GAGCTC 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 252
FaeI CATG 4 cut(s) 185, 227, 259, 282
FaqI GGGAC 1 cut(s) 184
FatI CATG 4 cut(s) 181, 223, 255, 278
Fnu4HI GCNGC 1 cut(s) 399
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 399
GluI GCNGC 1 cut(s) 399
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 2 cut(s) 13, 102
Hin1II CATG 4 cut(s) 185, 227, 259, 282
HinfI GANTC 1 cut(s) 290
Hpy188I TCNGA 2 cut(s) 50, 133
Hpy188III TCNNGA 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 185, 284
HpyF3I CTNAG 2 cut(s) 246, 439
Hsp92II CATG 4 cut(s) 185, 227, 259, 282
LmnI GCTCC 1 cut(s) 255
LpnPI CCDG 2 cut(s) 95, 436
Lsp1109I GCAGC 1 cut(s) 410
MboII GAAGA 1 cut(s) 34
MfeI CAATTG 1 cut(s) 186
MhlI GDGCHC 1 cut(s) 252
MlsI TGGCCA 2 cut(s) 13, 102
MluCI AATT 3 cut(s) 91, 186, 444
MluNI TGGCCA 2 cut(s) 13, 102
MnlI CCTC 3 cut(s) 260, 333, 387
Mox20I TGGCCA 2 cut(s) 13, 102
MscI TGGCCA 2 cut(s) 13, 102
MseI TTAA 3 cut(s) 89, 240, 414
Msp20I TGGCCA 2 cut(s) 13, 102
MspA1I CMGCKG 1 cut(s) 85
MunI CAATTG 1 cut(s) 186
NlaIII CATG 4 cut(s) 185, 227, 259, 282
NlaIV GGNNCC 1 cut(s) 150
NspI RCATGY 3 cut(s) 227, 259, 282
PciI ACATGT 2 cut(s) 255, 278
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 1 cut(s) 400
PscI ACATGT 2 cut(s) 255, 278
PsiI TTATAA 1 cut(s) 469
Psp124BI GAGCTC 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 150
PvuII CAGCTG 1 cut(s) 85
RsaI GTAC 3 cut(s) 78, 113, 433
RsaNI GTAC 3 cut(s) 77, 112, 432
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 3 cut(s) 89, 240, 414
SatI GCNGC 1 cut(s) 399
ScaI AGTACT 1 cut(s) 78
SduI GDGCHC 1 cut(s) 252
SetI ASST 7 cut(s) 87, 113, 247, 252, 351, 403, 421
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 3 cut(s) 91, 186, 444
SstI GAGCTC 1 cut(s) 252
TasI AATT 3 cut(s) 91, 186, 444
TatI WGTACW 2 cut(s) 76, 431
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 3 cut(s) 89, 240, 414
Tru9I TTAA 3 cut(s) 89, 240, 414
TseI GCWGC 1 cut(s) 398
TspDTI ATGAA 2 cut(s) 35, 170
XceI RCATGY 3 cut(s) 227, 259, 282
ZrmI AGTACT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.