Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022596

Physical Location & Seq

Genomic Coordinates Forward (+)

6728417 .. 6732056

Gene Structure 3640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGTGCAATATTGTCTGTCAGTTTACACCTGATGCCAAAACTGTAAAGCAGTTTAAAGAGAAGATAGATGATCAGTATCGAGTGAACATGATCCTTGATAATCTGCCTCTAGTGGTTCCCATTCAAAGGCCATATCAGGAATCACCTACCATTTATCAGCTTGGCTTTTCACGTTGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0006810 GO:0006873 GO:0006885 GO:0006897 GO:0006909 GO:0006950 GO:0007155 GO:0008150 GO:0009505 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0019725 GO:0022607 GO:0022610 GO:0030003 GO:0030004 GO:0030312 GO:0030641 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033157 GO:0034622 GO:0036293 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048878 GO:0050789 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0060341 GO:0065003 GO:0065007 GO:0065008 GO:0070070 GO:0070071 GO:0070072 GO:0070201 GO:0070482 GO:0070861 GO:0070863 GO:0071840 GO:0071944 GO:0090087 GO:0090316 GO:0097708 GO:0098588 GO:0098657 GO:0098771 GO:0098791 GO:0098805 GO:1903827 GO:1903829 GO:1904951 GO:2000008 GO:2000010

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

60

Amino Acids

7.09

Weight (kDa)

7.76

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP70	PF02990	2 - 56	9.1e-09	Endomembrane protein 70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022596)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0319081 RchiOBHm_Chr4g0386371
rosa_samantha	Rh2AG527600 Rh2CG512100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	85
AfiI	CCNNNNNNNGG	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	125
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
AlwI	GGATC	1 cut(s)	85
AoxI	GGCC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	135
BclI	TGATCA	1 cut(s)	70
BfaI	CTAG	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	117
BmsI	GCATC	1 cut(s)	22
BsaBI	GATNNNNATC	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse8I	GATNNNNATC	1 cut(s)	75
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	126
BsnI	GGCC	1 cut(s)	130
Bsp143I	GATC	2 cut(s)	70, 90
BspANI	GGCC	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	85
BssMI	GATC	2 cut(s)	70, 90
Bst4CI	ACNGT	1 cut(s)	43
BstKTI	GATC	2 cut(s)	73, 93
BstMBI	GATC	2 cut(s)	70, 90
BsuRI	GGCC	1 cut(s)	130
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	4 cut(s)	130, 160, 165, 179
CviKI_1	RGCY	4 cut(s)	130, 160, 165, 179
DpnI	GATC	2 cut(s)	72, 92
DpnII	GATC	2 cut(s)	70, 90
DraI	TTTAAA	1 cut(s)	55
FaeI	CATG	1 cut(s)	91
FaiI	YATR	2 cut(s)	89, 133
FatI	CATG	1 cut(s)	87
FbaI	TGATCA	1 cut(s)	70
FspBI	CTAG	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	130
Hin1II	CATG	1 cut(s)	91
HinfI	GANTC	1 cut(s)	140
HphI	GGTGA	1 cut(s)	135
Hpy166II	GTNNAC	2 cut(s)	24, 85
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	2 cut(s)	24, 85
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	70, 90
LpnPI	CCDG	2 cut(s)	42, 122
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	1 cut(s)	172
MalI	GATC	2 cut(s)	72, 92
MboI	GATC	2 cut(s)	70, 90
MboII	GAAGA	1 cut(s)	73
MnlI	CCTC	1 cut(s)	117
MseI	TTAA	2 cut(s)	54, 181
NdeII	GATC	2 cut(s)	70, 90
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	54, 181
Sau3AI	GATC	2 cut(s)	70, 90
SetI	ASST	4 cut(s)	31, 148, 162, 175
SfaNI	GCATC	1 cut(s)	22
SgeI	CNNG	7 cut(s)	41, 92, 100, 107, 122, 149, 173
SspI	AATATT	1 cut(s)	10
SspMI	CTAG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	2 cut(s)	54, 181
Tru9I	TTAA	2 cut(s)	54, 181
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.