RchiOBHm_Chr1g0320451

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
8091794 .. 8092586
793 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 723 bp
ATGGAGCTTTCAAGTATTTCAGAGTTCGGATTTGAAACAGAAGAATTCCTGAAAAGATTTACACAGCTTAAAAATTTAAAGACTACTGGTTGTGAAGAGCTGACATCTTTATGGAAAAGTAGGAATAGATGGCTGCAACATCACATTGGCAACTCTCAGTCTCACTTTGTTCAAGAGCTGGTGTCACTTCAACAACTACACATCATTGGATGCTCAACTCTAATTTCTTTTCCAGAGGTTGATTTGCCACCTTTTCTTAAACACTTGAAGATTGAGTCATGCAGTTCCCTTGTATATTTTACTAGATCTCATATGCCCCTAACGCTAAGAAGAATAGAGATTGGAGATTGCTTGGAACTTAAATCATTAGTGGAGGGAGAAGCGTCTTCGTCGTCCTCTTCTTCTTGTTTGATGAATGAGGAGGCATCCTCTCTTGAGTACTTGAAGATATGGAAGTGTCCATCTTTGACTTCCTTATTGGACAGAAGCCAACTGCCCAGGGCACTTGAACAGCTTTTCTTGTGGGATTGTGAACAACTGGAGTCAATAACTGATAAGTTCCAGGACAAAACTTGTCTTGAATGTGTTGATATACGGCGTTGTCCAAATCTTAAATCATTACCAGAGCGCATGTGCTACCTCACCAATCTTCAAAAGTTATATATTTTTCAGTGTGGAAGTCTTGTTTCCTTCCCTAGAGGCCAAATACAGCCTCCAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

27.65

Weight (kDa)

5.91

Isoelectric Point (pI)

70.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 44, 73
AfaI GTAC 1 cut(s) 440
AgsI TTSAA 9 cut(s) 12, 35, 173, 191, 268, 445, 509, 581, 653
AjnI CCWGG 2 cut(s) 497, 561
AluBI AGCT 5 cut(s) 7, 67, 100, 178, 514
AluI AGCT 5 cut(s) 7, 67, 100, 178, 514
Alw26I GTCTC 1 cut(s) 165
AoxI GGCC 1 cut(s) 700
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 2 cut(s) 44, 73
AspLEI GCGC 1 cut(s) 630
AsuHPI GGTGA 1 cut(s) 634
BaeGI GKGCMC 1 cut(s) 505
BbsI GAAGAC 1 cut(s) 378
BbvI GCAGC 1 cut(s) 120
BccI CCATC 2 cut(s) 123, 469
BceAI ACGGC 1 cut(s) 611
BciT130I CCWGG 2 cut(s) 499, 563
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 2 cut(s) 303, 696
BglII AGATCT 1 cut(s) 305
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
BmcAI AGTACT 1 cut(s) 440
Bme1390I CCNGG 2 cut(s) 499, 563
BmrFI CCNGG 2 cut(s) 499, 563
BmsI GCATC 2 cut(s) 200, 434
BpiI GAAGAC 1 cut(s) 378
BplI GAGNNNNNCTC 2 cut(s) 413, 445
BpmI CTGGAG 1 cut(s) 560
BpuEI CTTGAG 1 cut(s) 455
BsaJI CCNNGG 2 cut(s) 497, 498
Bse1I ACTGG 2 cut(s) 91, 543
BseBI CCWGG 2 cut(s) 499, 563
BseDI CCNNGG 2 cut(s) 497, 498
BseGI GGATG 2 cut(s) 215, 425
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 2 cut(s) 91, 543
BseRI GAGGAG 1 cut(s) 434
BseSI GKGCMC 1 cut(s) 505
BseXI GCAGC 1 cut(s) 120
BshFI GGCC 1 cut(s) 702
BsmAI GTCTC 1 cut(s) 165
BsnI GGCC 1 cut(s) 702
Bsp1286I GDGCHC 1 cut(s) 505
Bsp143I GATC 1 cut(s) 305
BspANI GGCC 1 cut(s) 702
BspCNI CTCAG 1 cut(s) 169
BspQI GCTCTTC 1 cut(s) 90
BsrI ACTGG 2 cut(s) 91, 543
BssECI CCNNGG 2 cut(s) 497, 498
BssMI GATC 1 cut(s) 305
Bst2UI CCWGG 2 cut(s) 499, 563
Bst6I CTCTTC 2 cut(s) 90, 403
BstDEI CTNAG 2 cut(s) 156, 326
BstF5I GGATG 2 cut(s) 215, 425
BstHHI GCGC 1 cut(s) 630
BstKTI GATC 1 cut(s) 308
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 1 cut(s) 305
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstNI CCWGG 2 cut(s) 499, 563
BstNSI RCATGY 1 cut(s) 634
BstSCI CCNGG 2 cut(s) 497, 561
BstSLI GKGCMC 1 cut(s) 505
BstV1I GCAGC 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
BsuRI GGCC 1 cut(s) 702
BtsCI GGATG 2 cut(s) 215, 425
BtsIMutI CAGTG 1 cut(s) 677
CfoI GCGC 1 cut(s) 630
CseI GACGC 1 cut(s) 372
Csp6I GTAC 1 cut(s) 439
CviAII CATG 2 cut(s) 279, 631
CviJI RGCY 9 cut(s) 7, 67, 100, 133, 178, 489, 514, 702, 712
CviKI_1 RGCY 9 cut(s) 7, 67, 100, 133, 178, 489, 514, 702, 712
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 2 cut(s) 156, 326
DpnI GATC 1 cut(s) 307
DpnII GATC 1 cut(s) 305
DraI TTTAAA 1 cut(s) 78
Eam1104I CTCTTC 2 cut(s) 90, 403
EarI CTCTTC 2 cut(s) 90, 403
EcoRI GAATTC 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 497, 561
FaeI CATG 2 cut(s) 282, 634
FatI CATG 2 cut(s) 278, 630
FauNDI CATATG 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 2 cut(s) 222, 412
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 2 cut(s) 303, 696
GlaI GCGC 1 cut(s) 629
GluI GCNGC 1 cut(s) 134
GsuI CTGGAG 1 cut(s) 560
HaeIII GGCC 1 cut(s) 702
HgaI GACGC 1 cut(s) 372
HhaI GCGC 1 cut(s) 630
Hin1II CATG 2 cut(s) 282, 634
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HinfI GANTC 2 cut(s) 275, 542
HphI GGTGA 1 cut(s) 634
Hpy166II GTNNAC 1 cut(s) 533
Hpy188I TCNGA 2 cut(s) 22, 29
Hpy188III TCNNGA 5 cut(s) 49, 173, 233, 434, 578
Hpy8I GTNNAC 1 cut(s) 533
Hpy99I CGWCG 1 cut(s) 394
HpyAV CCTTC 1 cut(s) 700
HpyCH4V TGCA 2 cut(s) 136, 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 2 cut(s) 156, 326
Hsp92II CATG 2 cut(s) 282, 634
HspAI GCGC 1 cut(s) 628
Kzo9I GATC 1 cut(s) 305
LguI GCTCTTC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 2 cut(s) 200, 434
MaeI CTAG 2 cut(s) 303, 696
MaeIII GTNAC 1 cut(s) 183
MalI GATC 1 cut(s) 307
MboI GATC 1 cut(s) 305
MboII GAAGA 9 cut(s) 53, 107, 280, 342, 378, 390, 393, 457, 641
MflI RGATCY 1 cut(s) 305
MhlI GDGCHC 1 cut(s) 505
MluCI AATT 3 cut(s) 44, 73, 222
MlyI GAGTC 2 cut(s) 284, 551
MnlI CCTC 9 cut(s) 229, 367, 406, 412, 415, 439, 650, 692, 723
MseI TTAA 5 cut(s) 69, 77, 258, 360, 612
MslI CAYNNNNRTG 1 cut(s) 109
MspR9I CCNGG 2 cut(s) 499, 563
MvaI CCWGG 2 cut(s) 499, 563
MwoI GCNNNNNNNGC 1 cut(s) 322
NdeI CATATG 1 cut(s) 312
NdeII GATC 1 cut(s) 305
NlaIII CATG 2 cut(s) 282, 634
NmuCI GTSAC 1 cut(s) 183
NspI RCATGY 1 cut(s) 634
PasI CCCWGGG 1 cut(s) 498
PciSI GCTCTTC 1 cut(s) 90
PfoI TCCNGGA 1 cut(s) 561
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 2 cut(s) 283, 550
PpsI GAGTC 2 cut(s) 283, 550
Psp6I CCWGG 2 cut(s) 497, 561
PspGI CCWGG 2 cut(s) 497, 561
PsuI RGATCY 1 cut(s) 305
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
RseI CAYNNNNRTG 1 cut(s) 109
SapI GCTCTTC 1 cut(s) 90
SaqAI TTAA 5 cut(s) 69, 77, 258, 360, 612
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 1 cut(s) 305
ScaI AGTACT 1 cut(s) 440
SchI GAGTC 2 cut(s) 284, 551
ScrFI CCNGG 2 cut(s) 499, 563
SduI GDGCHC 1 cut(s) 505
SetI ASST 9 cut(s) 9, 69, 102, 180, 240, 253, 516, 642, 722
SfaNI GCATC 2 cut(s) 200, 434
SmiMI CAYNNNNRTG 1 cut(s) 109
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 3 cut(s) 44, 73, 222
SspMI CTAG 2 cut(s) 303, 696
StyD4I CCNGG 2 cut(s) 497, 561
TasI AATT 3 cut(s) 44, 73, 222
TatI WGTACW 1 cut(s) 438
Tru1I TTAA 5 cut(s) 69, 77, 258, 360, 612
Tru9I TTAA 5 cut(s) 69, 77, 258, 360, 612
TscAI CASTG 1 cut(s) 677
TseFI GTSAC 1 cut(s) 183
TseI GCWGC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 183
TspDTI ATGAA 1 cut(s) 428
TspRI CASTG 1 cut(s) 677
XapI RAATTY 2 cut(s) 44, 73
XceI RCATGY 1 cut(s) 634
XspI CTAG 2 cut(s) 303, 696
ZrmI AGTACT 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.