RchiOBHm_Chr1g0320871

U3 small nucleolar ribonucleoprotein protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
8389235 .. 8390304
1070 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 234 bp
ATGTGGACTATAGGTTTTGGAAATCTGAAGTTATTTCTGAAATTGTTGAAAGTACGTTGCCGTGCACACGACTACACTGATGTCGTGTTGGTGCATGAACATCGTGGTAAACCCGATGGTTTGATTGTTTCAAGACATGACATCAAGGACAAGAAAGCCATGGGAACGGTGCCACAGGCTTATCCACATTTGATTATTAACAATTTCACGACTAAGGGGAGCCAACCTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

77

Amino Acids

8.77

Weight (kDa)

9.84

Isoelectric Point (pI)

2.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 47
AfaI GTAC 1 cut(s) 54
AgsI TTSAA 2 cut(s) 49, 132
Alw21I GWGCWC 1 cut(s) 67
Alw44I GTGCAC 1 cut(s) 63
ApaLI GTGCAC 1 cut(s) 63
BaeGI GKGCMC 1 cut(s) 67
BanI GGYRCC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 67
BccI CCATC 1 cut(s) 110
BceAI ACGGC 1 cut(s) 45
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BfmI CTRYAG 1 cut(s) 9
BmiI GGNNCC 2 cut(s) 171, 221
BsaJI CCNNGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 159
BseSI GKGCMC 1 cut(s) 67
BshNI GGYRCC 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 67
Bsp19I CCATGG 1 cut(s) 159
BspLI GGNNCC 2 cut(s) 171, 221
BspT107I GGYRCC 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 213
BstDSI CCRYGG 1 cut(s) 159
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 67
BtgI CCRYGG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 75
Csp6I GTAC 1 cut(s) 53
CviAII CATG 3 cut(s) 95, 137, 160
CviJI RGCY 3 cut(s) 158, 179, 222
CviKI_1 RGCY 3 cut(s) 158, 179, 222
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 47
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 3 cut(s) 98, 140, 163
FaiI YATR 5 cut(s) 11, 96, 138, 161, 232
FatI CATG 3 cut(s) 94, 136, 159
Hin1II CATG 3 cut(s) 98, 140, 163
Hpy166II GTNNAC 3 cut(s) 6, 65, 110
Hpy188I TCNGA 2 cut(s) 27, 39
Hpy188III TCNNGA 2 cut(s) 132, 208
Hpy8I GTNNAC 3 cut(s) 6, 65, 110
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 2 cut(s) 65, 94
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 3 cut(s) 98, 140, 163
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 1 cut(s) 161
MaeII ACGT 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 2 cut(s) 41, 202
MseI TTAA 1 cut(s) 198
NcoI CCATGG 1 cut(s) 159
NlaIII CATG 3 cut(s) 98, 140, 163
NlaIV GGNNCC 2 cut(s) 171, 221
PspN4I GGNNCC 2 cut(s) 171, 221
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 198
SduI GDGCHC 1 cut(s) 67
SetI ASST 3 cut(s) 16, 58, 229
SfcI CTRYAG 1 cut(s) 9
Sse9I AATT 2 cut(s) 41, 202
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 1 cut(s) 58
TasI AATT 2 cut(s) 41, 202
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 111
TspRI CASTG 1 cut(s) 82
VneI GTGCAC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.