RchiOBHm_Chr1g0322241

ATP-dependent RNA helicase SUPV3L1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
9659403 .. 9675315
15913 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
ATGCTCAGAATGATCAAGTTGACTAAATTTGCTTGGGATGGCATATTTACACCAGGGAAACTTCAGATACCAAAAACACCAGGTGCACTCAAAGAGCTTGAATCCATTCACAAGGTATTGGATTTGTATGTTTGGTTGAGTTTCCGATTAGAGGAGTCATTCCCATATCGTGAGCTTGCATCTTCACAGAAGTCCATCTGCCACCTGTTGATCAAAGAGTTTCTAGAGAGATTTGGTTTGCAAAAGCAGAGGCCCAAGGCCAAGAGATTAGCTTCAAATACTACCTTAACTTCCTTATTGTCCCAAAAGAACAGAGCCTACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SUV3_C

Protein Analysis

108

Amino Acids

12.59

Weight (kDa)

10.06

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUV3_C PF12513 30 - 77 4.8e-15 ATP-dependent RNA helicase SUV3 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 47
AdeI CACNNNGTG 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 2 cut(s) 101, 276
AjnI CCWGG 2 cut(s) 52, 79
AluBI AGCT 3 cut(s) 97, 175, 272
AluI AGCT 3 cut(s) 97, 175, 272
Alw21I GWGCWC 1 cut(s) 88
Alw44I GTGCAC 1 cut(s) 84
AoxI GGCC 2 cut(s) 251, 258
ApaLI GTGCAC 1 cut(s) 84
ApoI RAATTY 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 252
BaeGI GKGCMC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 88
BccI CCATC 2 cut(s) 32, 203
BciT130I CCWGG 2 cut(s) 54, 81
BclI TGATCA 2 cut(s) 12, 210
BfaI CTAG 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 54, 81
BmgT120I GGNCC 1 cut(s) 252
BmrFI CCNGG 2 cut(s) 54, 81
BmsI GCATC 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 53, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 151
BseBI CCWGG 2 cut(s) 54, 81
BseDI CCNNGG 2 cut(s) 53, 255
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 167
BseSI GKGCMC 1 cut(s) 88
BshFI GGCC 2 cut(s) 253, 260
BsiHKAI GWGCWC 1 cut(s) 88
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 286
BsnI GGCC 2 cut(s) 253, 260
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 2 cut(s) 12, 210
BspANI GGCC 2 cut(s) 253, 260
BspCNI CTCAG 1 cut(s) 18
BssECI CCNNGG 2 cut(s) 53, 255
BssMI GATC 2 cut(s) 12, 210
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 2 cut(s) 54, 81
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 5
BstF5I GGATG 1 cut(s) 43
BstKTI GATC 2 cut(s) 15, 213
BstMBI GATC 2 cut(s) 12, 210
BstNI CCWGG 2 cut(s) 54, 81
BstSCI CCNGG 2 cut(s) 52, 79
BstSLI GKGCMC 1 cut(s) 88
BsuRI GGCC 2 cut(s) 253, 260
BtsCI GGATG 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 252
CsiI ACCWGGT 1 cut(s) 79
CviJI RGCY 6 cut(s) 97, 175, 253, 260, 272, 317
CviKI_1 RGCY 6 cut(s) 97, 175, 253, 260, 272, 317
DdeI CTNAG 1 cut(s) 5
DpnI GATC 2 cut(s) 14, 212
DpnII GATC 2 cut(s) 12, 210
DraIII CACNNNGTG 1 cut(s) 83
Eco130I CCWWGG 1 cut(s) 255
Eco57I CTGAAG 1 cut(s) 47
EcoRII CCWGG 2 cut(s) 52, 79
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaiI YATR 3 cut(s) 44, 129, 166
FaqI GGGAC 1 cut(s) 286
FbaI TGATCA 2 cut(s) 12, 210
FokI GGATG 1 cut(s) 50
FspBI CTAG 1 cut(s) 224
HaeIII GGCC 2 cut(s) 253, 260
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 2 cut(s) 101, 155
Hpy166II GTNNAC 2 cut(s) 21, 86
Hpy188I TCNGA 3 cut(s) 8, 66, 146
Hpy188III TCNNGA 2 cut(s) 170, 224
Hpy8I GTNNAC 2 cut(s) 21, 86
HpyCH4V TGCA 3 cut(s) 86, 179, 241
HpyF3I CTNAG 1 cut(s) 5
Ksp22I TGATCA 2 cut(s) 12, 210
Kzo9I GATC 2 cut(s) 12, 210
LpnPI CCDG 5 cut(s) 39, 66, 66, 93, 218
LweI GCATC 1 cut(s) 188
MabI ACCWGGT 1 cut(s) 79
MaeI CTAG 1 cut(s) 224
MalI GATC 2 cut(s) 14, 212
MboI GATC 2 cut(s) 12, 210
MboII GAAGA 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 1 cut(s) 26
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 2 cut(s) 145, 243
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 1 cut(s) 287
MspR9I CCNGG 2 cut(s) 54, 81
MvaI CCWGG 2 cut(s) 54, 81
NdeII GATC 2 cut(s) 12, 210
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 101
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
Psp6I CCWGG 2 cut(s) 52, 79
PspGI CCWGG 2 cut(s) 52, 79
PspPI GGNCC 1 cut(s) 252
PsrI GAACNNNNNNTAC 1 cut(s) 302
SaqAI TTAA 1 cut(s) 287
Sau3AI GATC 2 cut(s) 12, 210
Sau96I GGNCC 1 cut(s) 252
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 54, 81
SduI GDGCHC 1 cut(s) 88
SetI ASST 7 cut(s) 85, 99, 117, 177, 207, 274, 287
SexAI ACCWGGT 1 cut(s) 79
SfaNI GCATC 1 cut(s) 188
Sse9I AATT 1 cut(s) 26
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 2 cut(s) 52, 79
StyI CCWWGG 1 cut(s) 255
TasI AATT 1 cut(s) 26
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
VneI GTGCAC 1 cut(s) 84
XapI RAATTY 1 cut(s) 26
XbaI TCTAGA 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.