RchiOBHm_Chr1g0322441

urease accessory protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
9790616 .. 9792772
2157 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGACGATTTTGGGCTCCAGAAATTTAAAAATTACATACTGCCATCTCTCTCTCCTCTCCCACTCTCTATGCCGGCTATCTCTTCTCTGTCTCTCTCTCTCCTCCCTCGCTTTCTGCCGTACTTCCCAAAGAGCTTTCATGTTTATCACAATGAGAGATGTTATTTCTGCTGCAACAAGGCTGAATTTGGTCGGATCCCTTGGTGCAACTGTTCTGCAACATCATATTGCTCCTATCTCTGACGCTATACTGAATCAATGGAAGGACATTCCAGTTGAGGAAGCATGCCAAACTGTTCCTTTGCTTGATATCGTGCAGGGTTGTCATAGCTACCTGTTTTCTAGACCGTTCTGTTCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

13.19

Weight (kDa)

8.57

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 189, 202
AcsI RAATTY 2 cut(s) 22, 184
AfaI GTAC 1 cut(s) 121
AluBI AGCT 2 cut(s) 134, 330
AluI AGCT 2 cut(s) 134, 330
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 2 cut(s) 189, 202
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 2 cut(s) 22, 184
BamHI GGATCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 157
BccI CCATC 1 cut(s) 51
BceAI ACGGC 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 1 cut(s) 342
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BmiI GGNNCC 2 cut(s) 16, 196
BsaJI CCNNGG 1 cut(s) 199
Bse118I RCCGGY 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 199
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 2 cut(s) 44, 91
BseXI GCAGC 1 cut(s) 157
BsgI GTGCAG 1 cut(s) 335
BsiSI CCGG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 1 cut(s) 194
BspLI GGNNCC 2 cut(s) 16, 196
BspPI GGATC 2 cut(s) 189, 202
BsrFI RCCGGY 1 cut(s) 72
BsrI ACTGG 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 199
Bst4CI ACNGT 3 cut(s) 211, 295, 348
Bst6I CTCTTC 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 74, 286
BstKTI GATC 1 cut(s) 197
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 1 cut(s) 194
BstNSI RCATGY 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
Cac8I GCNNGC 2 cut(s) 74, 286
Cfr10I RCCGGY 1 cut(s) 72
CseI GACGC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 120
CviAII CATG 2 cut(s) 139, 285
CviJI RGCY 5 cut(s) 15, 76, 134, 181, 330
CviKI_1 RGCY 5 cut(s) 15, 76, 134, 181, 330
CviQI GTAC 1 cut(s) 120
DpnI GATC 1 cut(s) 196
DpnII GATC 1 cut(s) 194
DraI TTTAAA 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 17
Eco32I GATATC 1 cut(s) 310
EcoRV GATATC 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 2 cut(s) 142, 288
FaiI YATR 7 cut(s) 37, 70, 140, 225, 248, 286, 327
FatI CATG 2 cut(s) 138, 284
Fnu4HI GCNGC 1 cut(s) 171
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 171
FspBI CTAG 1 cut(s) 342
GluI GCNGC 1 cut(s) 171
HapII CCGG 1 cut(s) 73
HgaI GACGC 1 cut(s) 251
Hin1II CATG 2 cut(s) 142, 288
HinfI GANTC 1 cut(s) 253
HpaII CCGG 1 cut(s) 73
Hpy188I TCNGA 2 cut(s) 194, 241
Hpy188III TCNNGA 3 cut(s) 18, 342, 357
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 3 cut(s) 211, 295, 348
HpyCH4V TGCA 4 cut(s) 173, 206, 217, 316
Hsp92II CATG 2 cut(s) 142, 288
KroI GCCGGC 1 cut(s) 72
KroNI GCCGGC 1 cut(s) 74
Kzo9I GATC 1 cut(s) 194
LmnI GCTCC 2 cut(s) 20, 235
LpnPI CCDG 5 cut(s) 31, 86, 285, 302, 347
Lsp1109I GCAGC 1 cut(s) 157
MaeI CTAG 1 cut(s) 342
MalI GATC 1 cut(s) 196
MboI GATC 1 cut(s) 194
MboII GAAGA 1 cut(s) 74
MflI RGATCY 1 cut(s) 194
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 3 cut(s) 22, 30, 184
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 4 cut(s) 65, 112, 116, 271
MroNI GCCGGC 1 cut(s) 72
MseI TTAA 1 cut(s) 26
MspI CCGG 1 cut(s) 73
NaeI GCCGGC 1 cut(s) 74
NdeII GATC 1 cut(s) 194
NgoMIV GCCGGC 1 cut(s) 72
NlaIII CATG 2 cut(s) 142, 288
NlaIV GGNNCC 2 cut(s) 16, 196
NspI RCATGY 1 cut(s) 288
PaeI GCATGC 1 cut(s) 288
PdiI GCCGGC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 253
PkrI GCNGC 1 cut(s) 172
PspN4I GGNNCC 2 cut(s) 16, 196
PsuI RGATCY 1 cut(s) 194
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 1 cut(s) 194
SduI GDGCHC 1 cut(s) 17
SetI ASST 3 cut(s) 136, 332, 336
SphI GCATGC 1 cut(s) 288
Sse9I AATT 3 cut(s) 22, 30, 184
SspMI CTAG 1 cut(s) 342
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 3 cut(s) 211, 295, 348
TasI AATT 3 cut(s) 22, 30, 184
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 127
XapI RAATTY 2 cut(s) 22, 184
XbaI TCTAGA 1 cut(s) 341
XceI RCATGY 1 cut(s) 288
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.