RchiOBHm_Chr1g0322611

DNA (cytosine-5)-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
9943691 .. 9944564
874 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 339 bp
ATGGGTGTTTCGTTTTTGTACTGCTTGCTGAACTTAATGAAAGGGCTGACCTATTTTGATAAAAAAAAAATGGTTCATTGGGATTTAGATATTCTCTCTATTAAATTCGCTCATAGGTTCGTTTGCATTTATATTTCCTACAGTTTCACTTTACCACAGAGTTATATTTGCTTCGTGGCTTATCACCCGTCAGTTTTGAAAGATCAATTTCCCAATGGGATCAATGTCCTCTCTCTTTTCTCTGGGATTGCTGGTGCAGAGATAGCTCTTCACCGTCTTGGTATCCTGATGAAGATGTTGGAAAATATGGACTTCACATTATCTCATAGCATTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_methylase

Protein Analysis

112

Amino Acids

12.87

Weight (kDa)

8.81

Isoelectric Point (pI)

24.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 1 cut(s) 104
AfaI GTAC 1 cut(s) 20
AgsI TTSAA 1 cut(s) 199
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
AlwI GGATC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 176, 263
BciVI GTATCC 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 139
BfuI GTATCC 1 cut(s) 293
BsgI GTGCAG 1 cut(s) 276
Bsp143I GATC 2 cut(s) 202, 219
BspPI GGATC 1 cut(s) 227
BspQI GCTCTTC 1 cut(s) 273
BssMI GATC 2 cut(s) 202, 219
Bst4CI ACNGT 2 cut(s) 143, 275
Bst6I CTCTTC 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 26
BstKTI GATC 2 cut(s) 205, 222
BstMBI GATC 2 cut(s) 202, 219
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstSFI CTRYAG 1 cut(s) 139
BsuI GTATCC 1 cut(s) 293
Cac8I GCNNGC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 19
CviJI RGCY 3 cut(s) 46, 179, 266
CviKI_1 RGCY 3 cut(s) 46, 179, 266
CviQI GTAC 1 cut(s) 19
DpnI GATC 2 cut(s) 204, 221
DpnII GATC 2 cut(s) 202, 219
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
FaiI YATR 5 cut(s) 114, 132, 165, 308, 327
HphI GGTGA 2 cut(s) 176, 263
Hpy188III TCNNGA 1 cut(s) 286
HpyCH4III ACNGT 2 cut(s) 143, 275
HpyCH4V TGCA 2 cut(s) 126, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
Kzo9I GATC 2 cut(s) 202, 219
LguI GCTCTTC 1 cut(s) 273
LpnPI CCDG 3 cut(s) 228, 237, 299
MalI GATC 2 cut(s) 204, 221
MboI GATC 2 cut(s) 202, 219
MboII GAAGA 2 cut(s) 260, 304
MluCI AATT 2 cut(s) 104, 206
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 1 cut(s) 239
MseI TTAA 3 cut(s) 35, 102, 333
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeII GATC 2 cut(s) 202, 219
PciSI GCTCTTC 1 cut(s) 273
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 3 cut(s) 35, 102, 333
Sau3AI GATC 2 cut(s) 202, 219
SetI ASST 3 cut(s) 53, 119, 268
SfcI CTRYAG 1 cut(s) 139
SgeI CNNG 7 cut(s) 37, 187, 199, 255, 264, 290, 298
Sse9I AATT 2 cut(s) 104, 206
TaaI ACNGT 2 cut(s) 143, 275
TasI AATT 2 cut(s) 104, 206
TatI WGTACW 1 cut(s) 18
Tru1I TTAA 3 cut(s) 35, 102, 333
Tru9I TTAA 3 cut(s) 35, 102, 333
TspDTI ATGAA 3 cut(s) 53, 65, 305
XapI RAATTY 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.