RchiOBHm_Chr1g0323321

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
10853890 .. 10854138
249 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 249 bp
ATGGCTAAGCGTGTTTATATATTCCTCATTCTCATACTCAATATGAGCTTACTTTGCAAAGCCATTGATAAAGATAGAAAGGTCCATATTGTGTACCTGGAATCACTTCCTGATGATGAGGTCTATTCATACATGTCTCATCACCTTGGTATACTAGAAAGAGTACGTTGTTGGGAGAAACTCTGCTGCAAAGTTCTTGACTATAAGTTACAAAAGAAGTTTCAATGGATTTGCTGCAGAGCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

82

Amino Acids

9.92

Weight (kDa)

8.96

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 151
AfaI GTAC 2 cut(s) 95, 165
AflIII ACRYGT 1 cut(s) 132
AgsI TTSAA 1 cut(s) 224
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 2 cut(s) 48, 242
AluI AGCT 2 cut(s) 48, 242
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 1 cut(s) 141
ApeKI GCWGC 2 cut(s) 186, 234
Asp700I GAANNNNTTC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 134
AvaII GGWCC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 2 cut(s) 173, 221
BciT130I CCWGG 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 235
BisI GCNGC 2 cut(s) 187, 235
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 2 cut(s) 188, 236
Bme1390I CCNGG 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 98
Bpu1102I GCTNAGC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 145
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 145
BseXI GCAGC 2 cut(s) 173, 221
BsiHKAI GWGCWC 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 244
Bsp1720I GCTNAGC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 145
BssNAI GTATAC 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 145
Bst1107I GTATAC 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 141
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 96
BstSFI CTRYAG 1 cut(s) 235
BstV1I GCAGC 2 cut(s) 173, 221
BstZ17I GTATAC 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 94, 164
CviAII CATG 1 cut(s) 133
CviJI RGCY 4 cut(s) 5, 48, 62, 242
CviKI_1 RGCY 4 cut(s) 5, 48, 62, 242
CviQI GTAC 2 cut(s) 94, 164
DdeI CTNAG 1 cut(s) 6
Ecl136II GAGCTC 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 82
Eco53kI GAGCTC 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 1 cut(s) 136
FaiI YATR 9 cut(s) 18, 20, 35, 44, 87, 130, 134, 152, 204
FatI CATG 1 cut(s) 132
FblI GTMKAC 1 cut(s) 151
Fnu4HI GCNGC 2 cut(s) 187, 235
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 2 cut(s) 187, 235
FspBI CTAG 1 cut(s) 155
GluI GCNGC 2 cut(s) 187, 235
Hin1II CATG 1 cut(s) 136
HinfI GANTC 1 cut(s) 101
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 2 cut(s) 94, 152
Hpy188III TCNNGA 2 cut(s) 110, 197
Hpy8I GTNNAC 2 cut(s) 94, 152
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 3 cut(s) 57, 189, 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 1 cut(s) 166
Hsp92II CATG 1 cut(s) 136
LpnPI CCDG 3 cut(s) 83, 110, 123
Lsp1109I GCAGC 2 cut(s) 173, 221
MaeI CTAG 1 cut(s) 155
MaeII ACGT 1 cut(s) 166
MaeIII GTNAC 1 cut(s) 207
MhlI GDGCHC 1 cut(s) 244
MnlI CCTC 2 cut(s) 35, 112
MroXI GAANNNNTTC 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 54
NlaIII CATG 1 cut(s) 136
NspI RCATGY 1 cut(s) 136
PciI ACATGT 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 2 cut(s) 188, 236
PscI ACATGT 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspPI GGNCC 1 cut(s) 82
PstI CTGCAG 1 cut(s) 239
RsaI GTAC 2 cut(s) 95, 165
RsaNI GTAC 2 cut(s) 94, 164
SacI GAGCTC 1 cut(s) 244
SatI GCNGC 2 cut(s) 187, 235
Sau96I GGNCC 1 cut(s) 82
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 244
SetI ASST 7 cut(s) 50, 84, 99, 123, 147, 169, 244
SfcI CTRYAG 1 cut(s) 235
SgeI CNNG 8 cut(s) 23, 109, 110, 122, 145, 158, 167, 209
SinI GGWCC 1 cut(s) 82
SspMI CTAG 1 cut(s) 155
SstI GAGCTC 1 cut(s) 244
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 145
TaiI ACGT 1 cut(s) 169
TfiI GAWTC 1 cut(s) 101
TseI GCWGC 2 cut(s) 186, 234
TspDTI ATGAA 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 82
XceI RCATGY 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 151
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.