Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

11182416 .. 11183480

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTACTTCAAATGCGGTGATGAGGTTGAAGCACGCAAGGTGTTTGATAAAATGTCTGTGAGGCATTTGTACTCGTGGAACAATATGTTATCTGCTGGTGTTTTGACTTCAGGCCTGATCAGTTTAGTACGAAGTAATTTAAGACCCAACACGATTGTTGTGAGTTCTCTTATCGACATGTATTCCAAATGCGGCAATTTGGGGGCCGGAAGGCAGGTATTCAAGCTCATGGGTGATAAGCAAGACACCGTGTTATGGAACACAATGATGTCTGCCTCAGCACAGCATGGTCATGGTATAGAGGCATTGCAGATGTTTGAAGACATGGTCAGTTCAGGTGTAAAGCCGGTTTCGACCACCTTGGTTGTCATTCTCAATGCTTGTAGTCATTCTGGTCTAGTGCAGGGACATGTGAGGAAAGAGCGAGCCATTAGTTGGGTAGAAGTTGGAAGTAGAGTGCATGCTTTCACTGTATCAGACCGGTTGCATCCTCTGAAAGAGGAAATATACTCAGTTTTGAAACAGTTAGCTGACCAGATGGAAGAAGATGCTTCAGTAACTAACGCTGAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

191

Amino Acids

21.15

Weight (kDa)

6.65

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	82 - 129	1e-09	PPR repeat family
PPR	PF01535	84 - 114	2.7e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	205
AccB7I	CCANNNNNTGG	1 cut(s)	435
AciI	CCGC	2 cut(s)	15, 192
AcuI	CTGAAG	2 cut(s)	93, 537
AfaI	GTAC	3 cut(s)	5, 71, 129
AfiI	CCNNNNNNNGG	2 cut(s)	255, 435
AflIII	ACRYGT	2 cut(s)	177, 409
AgeI	ACCGGT	1 cut(s)	480
AgsI	TTSAA	5 cut(s)	10, 29, 223, 320, 520
AluBI	AGCT	2 cut(s)	226, 530
AluI	AGCT	2 cut(s)	226, 530
AoxI	GGCC	2 cut(s)	112, 204
AsiGI	ACCGGT	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	204
AsuHPI	GGTGA	2 cut(s)	29, 245
BauI	CACGAG	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	327
BbvCI	CCTCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	532
BclI	TGATCA	1 cut(s)	117
BfaI	CTAG	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	205
BisI	GCNGC	1 cut(s)	193
BlsI	GCNGC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	205
BmsI	GCATC	2 cut(s)	496, 538
BpiI	GAAGAC	1 cut(s)	327
Bpu10I	CCTNAGC	1 cut(s)	277
BsaJI	CCNNGG	1 cut(s)	360
BsaWI	WCCGGW	1 cut(s)	480
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 435
Bse118I	RCCGGY	2 cut(s)	346, 480
Bse3DI	GCAATG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	360
BseGI	GGATG	1 cut(s)	487
BseLI	CCNNNNNNNGG	2 cut(s)	255, 435
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	3 cut(s)	291, 525, 558
BsgI	GTGCAG	1 cut(s)	422
BshFI	GGCC	2 cut(s)	114, 206
BshTI	ACCGGT	1 cut(s)	480
BsiSI	CCGG	3 cut(s)	207, 347, 481
BslFI	GGGAC	1 cut(s)	420
BslI	CCNNNNNNNGG	2 cut(s)	255, 435
BsmFI	GGGAC	1 cut(s)	420
BsnI	GGCC	2 cut(s)	114, 206
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	2 cut(s)	15, 192
BspANI	GGCC	2 cut(s)	114, 206
BspCNI	CTCAG	3 cut(s)	290, 524, 559
BspLI	GGNNCC	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	305
BsrFI	RCCGGY	2 cut(s)	346, 480
BssAI	RCCGGY	2 cut(s)	346, 480
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	1 cut(s)	117
BssSI	CACGAG	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	360
Bst2BI	CACGAG	1 cut(s)	73
Bst4CI	ACNGT	3 cut(s)	250, 472, 525
BstC8I	GCNNGC	3 cut(s)	34, 426, 462
BstDEI	CTNAG	3 cut(s)	277, 511, 567
BstF5I	GGATG	1 cut(s)	487
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstNSI	RCATGY	3 cut(s)	181, 413, 464
BstV2I	GAAGAC	1 cut(s)	327
BsuRI	GGCC	2 cut(s)	114, 206
BtsCI	GGATG	1 cut(s)	487
BtsIMutI	CAGTG	1 cut(s)	468
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	3 cut(s)	34, 426, 462
Cfr10I	RCCGGY	2 cut(s)	346, 480
Cfr13I	GGNCC	1 cut(s)	204
Csp6I	GTAC	3 cut(s)	4, 70, 128
CspAI	ACCGGT	1 cut(s)	480
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	7 cut(s)	178, 229, 287, 293, 325, 410, 461
CviJI	RGCY	6 cut(s)	114, 206, 226, 346, 428, 530
CviKI_1	RGCY	6 cut(s)	114, 206, 226, 346, 428, 530
CviQI	GTAC	3 cut(s)	4, 70, 128
DdeI	CTNAG	3 cut(s)	277, 511, 567
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	360
Eco147I	AGGCCT	1 cut(s)	114
Eco57I	CTGAAG	2 cut(s)	93, 537
EcoT14I	CCWWGG	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	7 cut(s)	181, 232, 290, 296, 328, 413, 464
FaqI	GGGAC	1 cut(s)	420
FatI	CATG	7 cut(s)	177, 228, 286, 292, 324, 409, 460
FbaI	TGATCA	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	193
FokI	GGATG	1 cut(s)	474
Fsp4HI	GCNGC	1 cut(s)	193
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	1 cut(s)	193
HaeIII	GGCC	2 cut(s)	114, 206
HapII	CCGG	3 cut(s)	207, 347, 481
Hin1II	CATG	7 cut(s)	181, 232, 290, 296, 328, 413, 464
HpaII	CCGG	3 cut(s)	207, 347, 481
HphI	GGTGA	2 cut(s)	29, 245
Hpy188I	TCNGA	2 cut(s)	478, 495
HpyAV	CCTTC	1 cut(s)	204
HpyCH4III	ACNGT	3 cut(s)	250, 472, 525
HpyCH4V	TGCA	4 cut(s)	310, 403, 460, 487
HpyF3I	CTNAG	3 cut(s)	277, 511, 567
Hsp92II	CATG	7 cut(s)	181, 232, 290, 296, 328, 413, 464
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	1 cut(s)	117
LweI	GCATC	2 cut(s)	496, 538
MaeI	CTAG	1 cut(s)	398
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	3 cut(s)	332, 554, 557
MluCI	AATT	3 cut(s)	136, 196, 571
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	7 cut(s)	16, 54, 286, 295, 408, 493, 501
MseI	TTAA	1 cut(s)	140
MslI	CAYNNNNRTG	2 cut(s)	266, 291
MspI	CCGG	3 cut(s)	207, 347, 481
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	7 cut(s)	181, 232, 290, 296, 328, 413, 464
NlaIV	GGNNCC	1 cut(s)	205
NspI	RCATGY	3 cut(s)	181, 413, 464
PaeI	GCATGC	1 cut(s)	464
PceI	AGGCCT	1 cut(s)	114
PciI	ACATGT	2 cut(s)	177, 409
PflFI	GACNNNGTC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	435
PinAI	ACCGGT	1 cut(s)	480
PkrI	GCNGC	1 cut(s)	194
PscI	ACATGT	2 cut(s)	177, 409
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	204
PsyI	GACNNNGTC	1 cut(s)	326
RsaI	GTAC	3 cut(s)	5, 71, 129
RsaNI	GTAC	3 cut(s)	4, 70, 128
RseI	CAYNNNNRTG	2 cut(s)	266, 291
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	1 cut(s)	193
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	204
SetI	ASST	7 cut(s)	27, 42, 219, 228, 340, 362, 532
SfaNI	GCATC	2 cut(s)	496, 538
SmiMI	CAYNNNNRTG	2 cut(s)	266, 291
SphI	GCATGC	1 cut(s)	464
Sse9I	AATT	3 cut(s)	136, 196, 571
SseBI	AGGCCT	1 cut(s)	114
SsiI	CCGC	2 cut(s)	15, 192
SspMI	CTAG	1 cut(s)	398
StuI	AGGCCT	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	3 cut(s)	250, 472, 525
TaqI	TCGA	2 cut(s)	174, 353
TasI	AATT	3 cut(s)	136, 196, 571
TatI	WGTACW	2 cut(s)	3, 69
TauI	GCSGC	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	1 cut(s)	475
TspRI	CASTG	1 cut(s)	475
Tth111I	GACNNNGTC	1 cut(s)	326
Van91I	CCANNNNNTGG	1 cut(s)	435
XceI	RCATGY	3 cut(s)	181, 413, 464
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.