RchiOBHm_Chr1g0323921

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0029524
Physical Location & Seq
Forward (+)
11424932 .. 11427111
2180 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 420 bp
ATGTATAGTCCAATGCATTCTAGCAACAAGATGAAGTCACTGGCTACTTTCCAGAATGATGCTAGCTGCACAGTTCTTTTGATGGATGGAAGTGCTGCATTGGGTCTCGATTTGAGCTTTGTAACGCATGTATTTTTAATGGAACCAATATGGGACAGGAGCATGGAGGAACAAGTCATTAGTCGTGCTCATCGGATGGGTGCTACTCGTCCTGTACACGTGGAAACTCTGGCGATGCGTGGCACTATTGAAGAGCAAATGCTGGAGTTCTTACAGGATTCTGATGAGTGCAGAAGATTTTTGAAGGAAGAGGCTGGAAAATCAGACCAAGGGGCACGAACTCAACGTTCCTTACATGATTTTGCTGACAGAAATTATCTTTCTCATCTTGGATTTGTACGGACAAATCCTCAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like Helicase_C SNF2_N zf-CW

Protein Analysis

139

Amino Acids

15.87

Weight (kDa)

5.83

Isoelectric Point (pI)

58.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Helicase_C PF00271 2 - 67 4.2e-08 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029524)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0323921
rosa_multiflora Rmu_sc0011010.1_g000013

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 346
AcvI CACGTG 1 cut(s) 220
AfaI GTAC 2 cut(s) 216, 399
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 2 cut(s) 251, 304
AluBI AGCT 2 cut(s) 66, 117
AluI AGCT 2 cut(s) 66, 117
Alw21I GWGCWC 1 cut(s) 190
Alw26I GTCTC 1 cut(s) 110
ApeKI GCWGC 2 cut(s) 66, 95
AsuNHI GCTAGC 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 337
BbrPI CACGTG 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 190
BbvI GCAGC 2 cut(s) 53, 82
BccI CCATC 3 cut(s) 76, 80, 190
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 2 cut(s) 21, 63
BisI GCNGC 2 cut(s) 67, 96
BlsI GCNGC 2 cut(s) 68, 97
BmiI GGNNCC 1 cut(s) 144
BmsI GCATC 2 cut(s) 49, 225
BmtI GCTAGC 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 284
BsaAI YACGTR 1 cut(s) 220
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 328
BseGI GGATG 2 cut(s) 91, 201
BseNI ACTGG 1 cut(s) 45
BseSI GKGCMC 1 cut(s) 337
BseXI GCAGC 2 cut(s) 53, 82
BsgI GTGCAG 2 cut(s) 52, 310
BsiHKAI GWGCWC 1 cut(s) 190
BslFI GGGAC 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 16
Bso31I GGTCTC 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 190, 337
Bsp1407I TGTACA 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 144
BspOI GCTAGC 1 cut(s) 66
BspQI GCTCTTC 1 cut(s) 246
BspTNI GGTCTC 1 cut(s) 110
BsrGI TGTACA 1 cut(s) 214
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 328
BssT1I CCWWGG 1 cut(s) 328
Bst4CI ACNGT 1 cut(s) 73
Bst6I CTCTTC 2 cut(s) 246, 303
BstAUI TGTACA 1 cut(s) 214
BstBAI YACGTR 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 411
BstF5I GGATG 2 cut(s) 91, 201
BstMAI GTCTC 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 131
BstSLI GKGCMC 1 cut(s) 337
BstV1I GCAGC 2 cut(s) 53, 82
BtgZI GCGATG 1 cut(s) 248
BtsCI GGATG 2 cut(s) 91, 201
BtsIMutI CAGTG 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 64
Csp6I GTAC 2 cut(s) 215, 398
CviAII CATG 3 cut(s) 128, 163, 356
CviJI RGCY 4 cut(s) 44, 66, 117, 314
CviKI_1 RGCY 4 cut(s) 44, 66, 117, 314
CviQI GTAC 2 cut(s) 215, 398
DdeI CTNAG 1 cut(s) 411
Eam1104I CTCTTC 2 cut(s) 246, 303
EarI CTCTTC 2 cut(s) 246, 303
Eco130I CCWWGG 1 cut(s) 328
Eco31I GGTCTC 1 cut(s) 110
Eco72I CACGTG 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 328
EcoT22I ATGCAT 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 328
FaeI CATG 3 cut(s) 131, 166, 359
FaiI YATR 5 cut(s) 6, 129, 151, 164, 357
FaqI GGGAC 1 cut(s) 167
FatI CATG 3 cut(s) 127, 162, 355
Fnu4HI GCNGC 2 cut(s) 67, 96
FokI GGATG 2 cut(s) 98, 208
Fsp4HI GCNGC 2 cut(s) 67, 96
FspBI CTAG 2 cut(s) 21, 63
GluI GCNGC 2 cut(s) 67, 96
GsuI CTGGAG 1 cut(s) 284
Hin1II CATG 3 cut(s) 131, 166, 359
HinfI GANTC 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 4 cut(s) 195, 283, 325, 414
Hpy188III TCNNGA 2 cut(s) 52, 107
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4IV ACGT 2 cut(s) 219, 346
HpyCH4V TGCA 4 cut(s) 16, 69, 98, 291
HpyF3I CTNAG 1 cut(s) 411
HpySE526I ACGT 2 cut(s) 219, 346
Hsp92II CATG 3 cut(s) 131, 166, 359
LguI GCTCTTC 1 cut(s) 246
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 8 cut(s) 26, 65, 142, 215, 225, 248, 260, 300
Lsp1109I GCAGC 2 cut(s) 53, 82
LweI GCATC 2 cut(s) 49, 225
MaeI CTAG 2 cut(s) 21, 63
MaeII ACGT 2 cut(s) 219, 346
MaeIII GTNAC 2 cut(s) 36, 121
MboII GAAGA 3 cut(s) 263, 306, 320
MhlI GDGCHC 2 cut(s) 190, 337
MluCI AATT 1 cut(s) 373
MnlI CCTC 3 cut(s) 160, 304, 420
Mph1103I ATGCAT 1 cut(s) 18
MseI TTAA 1 cut(s) 137
Mva1269I GAATGC 1 cut(s) 16
NheI GCTAGC 1 cut(s) 62
NlaIII CATG 3 cut(s) 131, 166, 359
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 36
NsiI ATGCAT 1 cut(s) 18
NspI RCATGY 1 cut(s) 131
PciSI GCTCTTC 1 cut(s) 246
PcsI WCGNNNNNNNCGW 1 cut(s) 343
PctI GAATGC 1 cut(s) 16
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 2 cut(s) 68, 97
PmaCI CACGTG 1 cut(s) 220
PmlI CACGTG 1 cut(s) 220
Ppu21I YACGTR 1 cut(s) 220
Psp1406I AACGTT 1 cut(s) 346
PspCI CACGTG 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 144
RsaI GTAC 2 cut(s) 216, 399
RsaNI GTAC 2 cut(s) 215, 398
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 2 cut(s) 67, 96
SduI GDGCHC 2 cut(s) 190, 337
SetI ASST 4 cut(s) 68, 119, 222, 349
SfaNI GCATC 2 cut(s) 49, 225
Sse9I AATT 1 cut(s) 373
SspMI CTAG 2 cut(s) 21, 63
StyI CCWWGG 1 cut(s) 328
TaaI ACNGT 1 cut(s) 73
TaiI ACGT 2 cut(s) 222, 349
TaqI TCGA 1 cut(s) 108
TasI AATT 1 cut(s) 373
TatI WGTACW 1 cut(s) 214
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 1 cut(s) 36
TseI GCWGC 2 cut(s) 66, 95
Tsp45I GTSAC 1 cut(s) 36
TspDTI ATGAA 1 cut(s) 47
TspGWI ACGGA 1 cut(s) 415
TspRI CASTG 1 cut(s) 45
XceI RCATGY 1 cut(s) 131
XspI CTAG 2 cut(s) 21, 63
Zsp2I ATGCAT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.