RchiOBHm_Chr1g0327161

MATE efflux family protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
15845603 .. 15845907
305 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGGTACCACATGCTTGGAGTTCATATGGAACAAAAAATACTGACATTGTTGACAGTGAGCATCCTTGGTCCTCATTTGGTTTTACACAAGCATGCACCATTCTCATTCCTCTTGGCAAAGACCATGAGATATCCAACGAAGCAGGAACTTTCAACCTATGGATGATGCCGAGTCTTTTCATGTATAGCCTCCTTCAATGCCTCAGTAGATTCTTATAG

Protein Analysis

72

Amino Acids

8.2

Weight (kDa)

5.3

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AfaI GTAC 1 cut(s) 6
AgsI TTSAA 2 cut(s) 154, 197
Asp718I GGTACC 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 69
AvaII GGWCC 1 cut(s) 69
BanI GGYRCC 1 cut(s) 4
Bme18I GGWCC 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 70, 156
BsaJI CCNNGG 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 2 cut(s) 61, 168
BseMII CTCAG 1 cut(s) 217
BshNI GGYRCC 1 cut(s) 4
BspCNI CTCAG 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 1 cut(s) 203
BstF5I GGATG 2 cut(s) 61, 168
BstNSI RCATGY 2 cut(s) 14, 96
BstXI CCANNNNNNTGG 1 cut(s) 15
BtsCI GGATG 2 cut(s) 61, 168
BtsIMutI CAGTG 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 5
CviAII CATG 4 cut(s) 11, 93, 125, 181
CviJI RGCY 1 cut(s) 189
CviKI_1 RGCY 1 cut(s) 189
CviQI GTAC 1 cut(s) 5
DdeI CTNAG 1 cut(s) 203
Eco130I CCWWGG 1 cut(s) 65
Eco32I GATATC 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 69
EcoRV GATATC 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 4 cut(s) 14, 96, 128, 184
FaiI YATR 9 cut(s) 12, 25, 27, 94, 126, 160, 182, 186, 217
FatI CATG 4 cut(s) 10, 92, 124, 180
FauNDI CATATG 1 cut(s) 25
FokI GGATG 2 cut(s) 48, 175
Hin1II CATG 4 cut(s) 14, 96, 128, 184
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HinfI GANTC 2 cut(s) 172, 210
Hpy166II GTNNAC 1 cut(s) 52
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 1 cut(s) 96
HpyF3I CTNAG 1 cut(s) 203
Hsp92II CATG 4 cut(s) 14, 96, 128, 184
KpnI GGTACC 1 cut(s) 8
LpnPI CCDG 1 cut(s) 129
LweI GCATC 2 cut(s) 70, 156
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 4 cut(s) 82, 120, 200, 212
MslI CAYNNNNRTG 1 cut(s) 91
NdeI CATATG 1 cut(s) 25
NlaIII CATG 4 cut(s) 14, 96, 128, 184
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 195
NspI RCATGY 2 cut(s) 14, 96
PaeI GCATGC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 210
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 69
PsrI GAACNNNNNNTAC 2 cut(s) 22, 54
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
RseI CAYNNNNRTG 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 69
SchI GAGTC 1 cut(s) 181
SetI ASST 1 cut(s) 159
SfaNI GCATC 2 cut(s) 70, 156
SinI GGWCC 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 91
SphI GCATGC 1 cut(s) 96
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 56
TfiI GAWTC 1 cut(s) 210
TscAI CASTG 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 12, 169
TspRI CASTG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 69
XceI RCATGY 2 cut(s) 14, 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.