RchiOBHm_Chr1g0327401
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
16196323 .. 16198445
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 198 bp
ATGACTGTAAGGGAGACTCTTGACTTTGCAGGACGGTGTCAAGGTGTTGGATTCAAATATGAATTACCTATACCCAACACGCATAACATCTGGAGCAGCAGCTTTGGTGTTTTCAGCCTTCTACATCATGGTATGATATTGTCATGGAAATATTTTGGATCTTTAAGTTTTTTGTTTACTCCTCTTTATAAAAGTTGA

Protein Analysis

65

Amino Acids

7.46

Weight (kDa)

8.98

Isoelectric Point (pI)

21.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 189
AclWI GGATC 1 cut(s) 166
AgsI TTSAA 1 cut(s) 55
AluBI AGCT 1 cut(s) 102
AluI AGCT 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 8
AlwI GGATC 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 96, 99
BbvI GCAGC 2 cut(s) 108, 111
BcoDI GTCTC 1 cut(s) 8
BisI GCNGC 2 cut(s) 97, 100
BlsI GCNGC 2 cut(s) 98, 101
BpmI CTGGAG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 171
BseXI GCAGC 2 cut(s) 108, 111
BsmAI GTCTC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 158
BspPI GGATC 1 cut(s) 166
BssMI GATC 1 cut(s) 158
Bst4CI ACNGT 2 cut(s) 7, 36
BstKTI GATC 1 cut(s) 161
BstMAI GTCTC 1 cut(s) 8
BstMBI GATC 1 cut(s) 158
BstV1I GCAGC 2 cut(s) 108, 111
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
CviAII CATG 2 cut(s) 128, 144
CviJI RGCY 2 cut(s) 102, 117
CviKI_1 RGCY 2 cut(s) 102, 117
DpnI GATC 1 cut(s) 160
DpnII GATC 1 cut(s) 158
FaeI CATG 2 cut(s) 131, 147
FaiI YATR 7 cut(s) 60, 71, 84, 129, 134, 145, 189
FatI CATG 2 cut(s) 127, 143
Fnu4HI GCNGC 2 cut(s) 97, 100
Fsp4HI GCNGC 2 cut(s) 97, 100
GluI GCNGC 2 cut(s) 97, 100
GsuI CTGGAG 1 cut(s) 112
Hin1II CATG 2 cut(s) 131, 147
HinfI GANTC 2 cut(s) 16, 51
Hpy166II GTNNAC 1 cut(s) 177
Hpy188III TCNNGA 2 cut(s) 20, 91
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 2 cut(s) 7, 36
HpyCH4V TGCA 1 cut(s) 29
Hsp92II CATG 2 cut(s) 131, 147
Kzo9I GATC 1 cut(s) 158
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 2 cut(s) 15, 76
Lsp1109I GCAGC 2 cut(s) 108, 111
MalI GATC 1 cut(s) 160
MboI GATC 1 cut(s) 158
MflI RGATCY 1 cut(s) 158
MluCI AATT 1 cut(s) 62
MlyI GAGTC 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 1 cut(s) 192
MseI TTAA 1 cut(s) 164
NdeII GATC 1 cut(s) 158
NlaIII CATG 2 cut(s) 131, 147
PfeI GAWTC 1 cut(s) 51
PflFI GACNNNGTC 1 cut(s) 36
PkrI GCNGC 2 cut(s) 98, 101
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PsiI TTATAA 1 cut(s) 189
PsuI RGATCY 1 cut(s) 158
PsyI GACNNNGTC 1 cut(s) 36
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 2 cut(s) 97, 100
Sau3AI GATC 1 cut(s) 158
SchI GAGTC 1 cut(s) 10
SetI ASST 3 cut(s) 46, 70, 104
SgeI CNNG 7 cut(s) 32, 42, 53, 91, 103, 140, 156
Sse9I AATT 1 cut(s) 62
SspI AATATT 1 cut(s) 152
TaaI ACNGT 2 cut(s) 7, 36
TasI AATT 1 cut(s) 62
TfiI GAWTC 1 cut(s) 51
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseI GCWGC 2 cut(s) 96, 99
TspDTI ATGAA 1 cut(s) 75
Tth111I GACNNNGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.