RchiOBHm_Chr1g0328381

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
17738722 .. 17752239
13518 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
ATGCATGTGTGTGTTGTTTTCTGGGAAAATGTTCTCAATGGCGTTTTCTTGCTTGCAGAGCTGAAGAAAGCCCAGACAAAAAACATGCCACATAGAACTCGACCTATGACTGCACTTTTGGTGTTTACTGGACTGAATGCTATCCTAGTTTCAACCATTACTCCTGTCTATGATTTCGTCTGCTTTCTTCGTTTTTGGGAAAGACGGAGGGAACGACTTCGTCAGGAACGTGAACCTACTTTATTAAAGAGTTCGGAATCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

10.44

Weight (kDa)

10.17

Isoelectric Point (pI)

55.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 83
AgsI TTSAA 1 cut(s) 153
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
ArsI GACNNNNNNTTYG 2 cut(s) 100, 132
Asp700I GAANNNNTTC 2 cut(s) 30, 216
BfaI CTAG 1 cut(s) 146
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bse1I ACTGG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 133
BsgI GTGCAG 1 cut(s) 96
BsmI GAATGC 1 cut(s) 142
BsrI ACTGG 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 54
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNSI RCATGY 2 cut(s) 8, 88
Cac8I GCNNGC 1 cut(s) 54
CviAII CATG 2 cut(s) 5, 85
CviJI RGCY 2 cut(s) 61, 71
CviKI_1 RGCY 2 cut(s) 61, 71
Eco57I CTGAAG 1 cut(s) 83
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 8, 88
FaiI YATR 5 cut(s) 6, 86, 93, 107, 171
FatI CATG 2 cut(s) 4, 84
FspBI CTAG 1 cut(s) 146
Hin1II CATG 2 cut(s) 8, 88
HinfI GANTC 1 cut(s) 257
Hpy166II GTNNAC 2 cut(s) 126, 233
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 2 cut(s) 224, 261
Hpy8I GTNNAC 2 cut(s) 126, 233
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 3 cut(s) 4, 56, 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 2 cut(s) 8, 88
LpnPI CCDG 5 cut(s) 7, 86, 114, 177, 209
MaeI CTAG 1 cut(s) 146
MaeII ACGT 1 cut(s) 229
MboII GAAGA 2 cut(s) 76, 179
MnlI CCTC 1 cut(s) 201
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 30, 216
MseI TTAA 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 9
Mva1269I GAATGC 1 cut(s) 142
MwoI GCNNNNNNNGC 1 cut(s) 58
NlaIII CATG 2 cut(s) 8, 88
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 88
PcsI WCGNNNNNNNCGW 2 cut(s) 211, 226
PctI GAATGC 1 cut(s) 142
PdmI GAANNNNTTC 2 cut(s) 30, 216
PfeI GAWTC 1 cut(s) 257
PflFI GACNNNGTC 1 cut(s) 219
PsyI GACNNNGTC 1 cut(s) 219
RseI CAYNNNNRTG 1 cut(s) 9
SaqAI TTAA 1 cut(s) 245
SetI ASST 4 cut(s) 63, 106, 232, 238
SmiMI CAYNNNNRTG 1 cut(s) 9
SspMI CTAG 1 cut(s) 146
TaiI ACGT 1 cut(s) 232
TaqI TCGA 1 cut(s) 100
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TspGWI ACGGA 1 cut(s) 220
Tth111I GACNNNGTC 1 cut(s) 219
XceI RCATGY 2 cut(s) 8, 88
XmnI GAANNNNTTC 2 cut(s) 30, 216
XspI CTAG 1 cut(s) 146
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.