RchiOBHm_Chr1g0329861

Belongs to the universal ribosomal protein uL24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
19593382 .. 19595384
2003 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 576 bp
ATGGGTTGGAAAGCAGCTGAGAAACTTATTAGGCACTGGAAGGTTCTTAGAGGAGACAATGTGATGATCATAAGAGGCAAAGACAAGGGTGAGACAAGTGTCATTAAGCGAGTCATTTGCTCTCAGAATCATGTAATTGTGGAGGGCAAAAATCTGCTGCAGGGATTGAAAGTGTCAATCCAGGTGATTACTCCTACCGGGACTAGGAAAGCTTCTGGTGTGCTGCATAATTGTTTTGTTCTTGTGCAGGTTGTAAAGAAACATATCAAGCAAGGCCAAGGTCATGAAGGCGGGATATTTACTGTTGAAGCCCCTCTTCATGCTTCAAATGTGCAAGTAACAGATCCAGTAACAGGGAGGCCTTGTAAGGTTGGGGTTAAATATCTTGAGGATGGAACAAAAGTTAGAGCAGTAAGAGGCACAGGAGCATCGGGATCTATAATCCCTCGTCCTGAGATCTTGAAGATAAGAGCTACCCCAAGACCTACCGTTGCTGGTTCAAAGGATACTCCTATGAATCTTGTGTTAGAGAAGACGTATGATGCCAAAACAGGGAAGGGCATGCCTGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KOW ribosomal_L24

Protein Analysis

191

Amino Acids

20.71

Weight (kDa)

10.09

Isoelectric Point (pI)

16.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ribosomal_L24 PF17136 82 - 143 7.9e-20 Large ribosomal subunit protein uL24, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 238
AciI CCGC 1 cut(s) 291
AclWI GGATC 2 cut(s) 338, 442
AfiI CCNNNNNNNGG 3 cut(s) 204, 353, 552
AgsI TTSAA 5 cut(s) 169, 308, 327, 463, 501
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 3 cut(s) 17, 212, 473
AluI AGCT 3 cut(s) 17, 212, 473
Alw26I GTCTC 2 cut(s) 48, 86
AlwI GGATC 2 cut(s) 338, 442
AoxI GGCC 2 cut(s) 274, 359
ApeKI GCWGC 3 cut(s) 14, 157, 223
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 2 cut(s) 101, 196
BbsI GAAGAC 1 cut(s) 539
BbvI GCAGC 3 cut(s) 26, 144, 210
BccI CCATC 1 cut(s) 386
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BciT130I CCWGG 1 cut(s) 182
BciVI GTATCC 1 cut(s) 499
BclI TGATCA 1 cut(s) 66
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 2 cut(s) 48, 86
BfaI CTAG 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 238
BfuI GTATCC 1 cut(s) 499
BglII AGATCT 1 cut(s) 456
BisI GCNGC 3 cut(s) 15, 158, 224
BlsI GCNGC 3 cut(s) 16, 159, 225
Bme1390I CCNGG 2 cut(s) 182, 199
BmrFI CCNGG 2 cut(s) 182, 199
BmsI GCATC 2 cut(s) 437, 532
BoxI GACNNNNGTC 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 539
BpuEI CTTGAG 1 cut(s) 407
BpuMI CCSGG 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 277
BsaXI ACNNNNNCTCC 4 cut(s) 45, 75, 349, 379
Bsc4I CCNNNNNNNGG 3 cut(s) 204, 353, 552
Bse1I ACTGG 2 cut(s) 41, 347
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 3 cut(s) 204, 353, 552
BseMII CTCAG 3 cut(s) 9, 137, 444
BseNI ACTGG 2 cut(s) 41, 347
BseRI GAGGAG 1 cut(s) 66
BseXI GCAGC 3 cut(s) 26, 144, 210
BsgI GTGCAG 1 cut(s) 266
BshFI GGCC 2 cut(s) 276, 361
BsiSI CCGG 1 cut(s) 198
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 3 cut(s) 204, 353, 552
BsmAI GTCTC 2 cut(s) 48, 86
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 2 cut(s) 276, 361
Bsp143I GATC 4 cut(s) 66, 343, 434, 456
BspACI CCGC 1 cut(s) 291
BspANI GGCC 2 cut(s) 276, 361
BspCNI CTCAG 3 cut(s) 10, 136, 445
BspHI TCATGA 1 cut(s) 283
BspMAI CTGCAG 1 cut(s) 162
BspMI ACCTGC 1 cut(s) 238
BspPI GGATC 2 cut(s) 338, 442
BsrI ACTGG 2 cut(s) 41, 347
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 4 cut(s) 66, 343, 434, 456
BssT1I CCWWGG 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 2 cut(s) 304, 490
Bst6I CTCTTC 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 563
BstDEI CTNAG 4 cut(s) 18, 47, 123, 453
BstF5I GGATG 1 cut(s) 397
BstKTI GATC 4 cut(s) 69, 346, 437, 459
BstMAI GTCTC 2 cut(s) 48, 86
BstMBI GATC 4 cut(s) 66, 343, 434, 456
BstNI CCWGG 1 cut(s) 182
BstNSI RCATGY 1 cut(s) 565
BstPAI GACNNNNGTC 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 180, 197
BstSFI CTRYAG 1 cut(s) 158
BstV1I GCAGC 3 cut(s) 26, 144, 210
BstV2I GAAGAC 1 cut(s) 539
BstX2I RGATCY 3 cut(s) 343, 434, 456
BstYI RGATCY 3 cut(s) 343, 434, 456
BsuI GTATCC 1 cut(s) 499
BsuRI GGCC 2 cut(s) 276, 361
BtsCI GGATG 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 34
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 563
CciI TCATGA 1 cut(s) 283
CviAII CATG 4 cut(s) 131, 284, 320, 562
CviJI RGCY 6 cut(s) 17, 212, 276, 311, 361, 473
CviKI_1 RGCY 6 cut(s) 17, 212, 276, 311, 361, 473
DdeI CTNAG 4 cut(s) 18, 47, 123, 453
DpnI GATC 4 cut(s) 68, 345, 436, 458
DpnII GATC 4 cut(s) 66, 343, 434, 456
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 277
Eco147I AGGCCT 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 277
FaeI CATG 4 cut(s) 134, 287, 323, 565
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FaqI GGGAC 1 cut(s) 214
FatI CATG 4 cut(s) 130, 283, 319, 561
FauI CCCGC 1 cut(s) 284
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 3 cut(s) 15, 158, 224
FokI GGATG 1 cut(s) 404
Fsp4HI GCNGC 3 cut(s) 15, 158, 224
FspBI CTAG 1 cut(s) 204
GluI GCNGC 3 cut(s) 15, 158, 224
HaeIII GGCC 2 cut(s) 276, 361
HapII CCGG 1 cut(s) 198
Hin1II CATG 4 cut(s) 134, 287, 323, 565
HindIII AAGCTT 1 cut(s) 210
HinfI GANTC 3 cut(s) 111, 127, 517
HpaII CCGG 1 cut(s) 198
HphI GGTGA 2 cut(s) 101, 196
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 5 cut(s) 284, 386, 432, 452, 460
HpyAV CCTTC 3 cut(s) 34, 281, 550
HpyCH4III ACNGT 2 cut(s) 304, 490
HpyCH4IV ACGT 1 cut(s) 536
HpyCH4V TGCA 4 cut(s) 160, 226, 247, 334
HpyF3I CTNAG 4 cut(s) 18, 47, 123, 453
HpySE526I ACGT 1 cut(s) 536
Hsp92II CATG 4 cut(s) 134, 287, 323, 565
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 4 cut(s) 66, 343, 434, 456
LmnI GCTCC 1 cut(s) 425
Lsp1109I GCAGC 3 cut(s) 26, 144, 210
LweI GCATC 2 cut(s) 437, 532
MaeI CTAG 1 cut(s) 204
MaeII ACGT 1 cut(s) 536
MaeIII GTNAC 2 cut(s) 337, 349
MalI GATC 4 cut(s) 68, 345, 436, 458
MboI GATC 4 cut(s) 66, 343, 434, 456
MboII GAAGA 3 cut(s) 308, 475, 544
MflI RGATCY 3 cut(s) 343, 434, 456
MluCI AATT 2 cut(s) 135, 229
MlyI GAGTC 1 cut(s) 120
MnlI CCTC 8 cut(s) 44, 68, 136, 324, 351, 382, 410, 456
MseI TTAA 2 cut(s) 105, 378
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 2 cut(s) 182, 199
MvaI CCWGG 1 cut(s) 182
NciI CCSGG 1 cut(s) 199
NdeII GATC 4 cut(s) 66, 343, 434, 456
NlaIII CATG 4 cut(s) 134, 287, 323, 565
NspI RCATGY 1 cut(s) 565
PaeI GCATGC 1 cut(s) 565
PagI TCATGA 1 cut(s) 283
PceI AGGCCT 1 cut(s) 361
PfeI GAWTC 2 cut(s) 127, 517
PkrI GCNGC 3 cut(s) 16, 159, 225
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PshAI GACNNNNGTC 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PstI CTGCAG 1 cut(s) 162
PsuI RGATCY 3 cut(s) 343, 434, 456
PvuII CAGCTG 1 cut(s) 17
SaqAI TTAA 2 cut(s) 105, 378
SatI GCNGC 3 cut(s) 15, 158, 224
Sau3AI GATC 4 cut(s) 66, 343, 434, 456
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 2 cut(s) 182, 199
SfaNI GCATC 2 cut(s) 437, 532
SfcI CTRYAG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
SphI GCATGC 1 cut(s) 565
Sse9I AATT 2 cut(s) 135, 229
SseBI AGGCCT 1 cut(s) 361
SsiI CCGC 1 cut(s) 291
SspMI CTAG 1 cut(s) 204
StuI AGGCCT 1 cut(s) 361
StyD4I CCNGG 2 cut(s) 180, 197
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 2 cut(s) 304, 490
TaiI ACGT 1 cut(s) 539
TasI AATT 2 cut(s) 135, 229
TfiI GAWTC 2 cut(s) 127, 517
Tru1I TTAA 2 cut(s) 105, 378
Tru9I TTAA 2 cut(s) 105, 378
TscAI CASTG 1 cut(s) 41
TseI GCWGC 3 cut(s) 14, 157, 223
TspDTI ATGAA 3 cut(s) 300, 308, 530
TspRI CASTG 1 cut(s) 41
XceI RCATGY 1 cut(s) 565
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.