RchiOBHm_Chr1g0330461

SNF2 domain-containing protein CLASSY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0024725
Physical Location & Seq
Reverse (-)
20175006 .. 20175632
627 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 627 bp
ATGGATGAATTGGTGGACACAACAGATTTACAAGAAGGAACCAAGGCAAAATTCTTTCTAAATATGCTGAGCTTATGTGAGTCATTGGGTGAGAAACTTTTGTTTTTCAGTCCGTACCTTGCACCTTTGAAATTTTTAGAGAGATTAACAGTCAAAACGAAGGGTTGGACTTCTGGAAGAGAAATATTTGTGATCACAGGTGGATCAAAGTCTGGGAATCAGGTATGGTCCATGAAGGGGTTTAACAATTCACCTGATGCTAAGGTCCTCTTCGGCTCAATCAAGGCATGCAGAGAGGGTATATCTCTTGTAGGGGCTTTGCGCGTCATAGTTTTGGATGTCCATCTTAATCCCTCAGTGACCCGACAAGCAATTGGCCGTGCATTTAGTCCTGGTCAAAAGAGGAAAGTCTTTGTATATAGATTGGTAGCTGGTGATAGCCCTGAAGAGGAAGATCATAAAACTTTCTTGCAAAAGGAATTAATTGCCAAGCTGTGGTTTGAATGGAATGAATATTGTGGTTATCGGGATTTTGGAGTGGATACTGTTGATGTGAAAGATTGTGCTGATCTGTTCCTTGAATGTCCAGTGTTAGGAGAAGATGTAAAGTTTCTCTATAGAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000166 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022402 GO:0022414 GO:0030491 GO:0030554 GO:0030702 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032553 GO:0032555 GO:0032559 GO:0033170 GO:0034641 GO:0035639 GO:0035822 GO:0035825 GO:0035861 GO:0036094 GO:0040029 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0097367 GO:0140013 GO:0140097 GO:0140110 GO:1901265 GO:1901360 GO:1901363 GO:1902679 GO:1902680 GO:1903046 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

208

Amino Acids

23.46

Weight (kDa)

6.18

Isoelectric Point (pI)

31.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Helicase_C PF00271 17 - 129 2.1e-09 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024725)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0330461
rosa_samantha Rh1BG085300 Rh1CG103000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 495
AccII CGCG 1 cut(s) 324
AclWI GGATC 1 cut(s) 211
AcoI YGGCCR 1 cut(s) 376
AcsI RAATTY 2 cut(s) 50, 131
AcuI CTGAAG 1 cut(s) 465
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 4 cut(s) 237, 448, 495, 593
AgsI TTSAA 3 cut(s) 130, 503, 581
AjnI CCWGG 1 cut(s) 391
AjuI GAANNNNNNNTTGG 2 cut(s) 35, 67
AluBI AGCT 3 cut(s) 72, 431, 493
AluI AGCT 3 cut(s) 72, 431, 493
AlwI GGATC 1 cut(s) 211
AoxI GGCC 1 cut(s) 376
ApoI RAATTY 2 cut(s) 50, 131
AseI ATTAAT 1 cut(s) 482
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 2 cut(s) 228, 265
AsuHPI GGTGA 3 cut(s) 101, 243, 446
AvaII GGWCC 2 cut(s) 228, 265
BccI CCATC 1 cut(s) 351
BceAI ACGGC 1 cut(s) 363
BciT130I CCWGG 1 cut(s) 393
BciVI GTATCC 1 cut(s) 535
BclI TGATCA 1 cut(s) 192
BfmI CTRYAG 1 cut(s) 616
BfuI GTATCC 1 cut(s) 535
BlpI GCTNAGC 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 393
Bme18I GGWCC 2 cut(s) 228, 265
BmgT120I GGNCC 2 cut(s) 228, 265
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 393
BmsI GCATC 1 cut(s) 247
Bpu10I CCTNAGC 1 cut(s) 261
Bpu1102I GCTNAGC 1 cut(s) 68
BsaBI GATNNNNATC 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bsc4I CCNNNNNNNGG 4 cut(s) 237, 448, 495, 593
Bse1I ACTGG 1 cut(s) 587
Bse8I GATNNNNATC 1 cut(s) 342
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 2 cut(s) 10, 343
BseJI GATNNNNATC 1 cut(s) 342
BseLI CCNNNNNNNGG 4 cut(s) 237, 448, 495, 593
BseMII CTCAG 2 cut(s) 59, 369
BseNI ACTGG 1 cut(s) 587
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 1 cut(s) 378
BslI CCNNNNNNNGG 4 cut(s) 237, 448, 495, 593
BsnI GGCC 1 cut(s) 378
Bsp143I GATC 4 cut(s) 192, 203, 454, 568
Bsp1720I GCTNAGC 1 cut(s) 68
BspANI GGCC 1 cut(s) 378
BspCNI CTCAG 2 cut(s) 60, 368
BspFNI CGCG 1 cut(s) 324
BspLI GGNNCC 1 cut(s) 40
BspPI GGATC 1 cut(s) 211
BsrI ACTGG 1 cut(s) 587
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 4 cut(s) 192, 203, 454, 568
BssT1I CCWWGG 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 2 cut(s) 151, 547
Bst6I CTCTTC 3 cut(s) 172, 275, 441
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 3 cut(s) 68, 261, 355
BstF5I GGATG 2 cut(s) 10, 343
BstFNI CGCG 1 cut(s) 324
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 4 cut(s) 195, 206, 457, 571
BstMBI GATC 4 cut(s) 192, 203, 454, 568
BstNI CCWGG 1 cut(s) 393
BstNSI RCATGY 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 391
BstSFI CTRYAG 1 cut(s) 616
BstUI CGCG 1 cut(s) 324
BsuI GTATCC 1 cut(s) 535
BsuRI GGCC 1 cut(s) 378
BtsCI GGATG 2 cut(s) 10, 343
BtsIMutI CAGTG 2 cut(s) 363, 594
Cac8I GCNNGC 1 cut(s) 289
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 2 cut(s) 228, 265
CseI GACGC 1 cut(s) 313
Csp6I GTAC 1 cut(s) 115
CviAII CATG 2 cut(s) 232, 288
CviJI RGCY 7 cut(s) 72, 276, 317, 378, 431, 441, 493
CviKI_1 RGCY 7 cut(s) 72, 276, 317, 378, 431, 441, 493
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 3 cut(s) 68, 261, 355
DpnI GATC 4 cut(s) 194, 205, 456, 570
DpnII GATC 4 cut(s) 192, 203, 454, 568
EaeI YGGCCR 1 cut(s) 376
Eam1104I CTCTTC 3 cut(s) 172, 275, 441
EarI CTCTTC 3 cut(s) 172, 275, 441
Eco130I CCWWGG 1 cut(s) 42
Eco47I GGWCC 2 cut(s) 228, 265
Eco57I CTGAAG 1 cut(s) 465
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 2 cut(s) 235, 291
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FatI CATG 2 cut(s) 231, 287
FbaI TGATCA 1 cut(s) 192
FokI GGATG 2 cut(s) 17, 350
GlaI GCGC 1 cut(s) 323
HaeIII GGCC 1 cut(s) 378
HgaI GACGC 1 cut(s) 313
HhaI GCGC 1 cut(s) 324
Hin1II CATG 2 cut(s) 235, 291
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HinfI GANTC 2 cut(s) 80, 217
HphI GGTGA 3 cut(s) 101, 243, 446
Hpy166II GTNNAC 1 cut(s) 16
Hpy188III TCNNGA 2 cut(s) 174, 527
Hpy8I GTNNAC 1 cut(s) 16
HpyAV CCTTC 3 cut(s) 29, 154, 229
HpyCH4III ACNGT 2 cut(s) 151, 547
HpyCH4V TGCA 4 cut(s) 122, 291, 383, 472
HpyF3I CTNAG 3 cut(s) 68, 261, 355
Hsp92II CATG 2 cut(s) 235, 291
HspAI GCGC 1 cut(s) 322
Ksp22I TGATCA 1 cut(s) 192
Kzo9I GATC 4 cut(s) 192, 203, 454, 568
LweI GCATC 1 cut(s) 247
MaeIII GTNAC 1 cut(s) 358
MalI GATC 4 cut(s) 194, 205, 456, 570
MboI GATC 4 cut(s) 192, 203, 454, 568
MboII GAAGA 5 cut(s) 189, 262, 458, 464, 611
MfeI CAATTG 1 cut(s) 372
MluCI AATT 7 cut(s) 8, 50, 131, 247, 372, 479, 483
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 5 cut(s) 278, 289, 364, 396, 442
MseI TTAA 5 cut(s) 146, 243, 348, 482, 625
MspR9I CCNGG 1 cut(s) 393
MunI CAATTG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 393
MvnI CGCG 1 cut(s) 324
NdeII GATC 4 cut(s) 192, 203, 454, 568
NlaIII CATG 2 cut(s) 235, 291
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 358
NspI RCATGY 1 cut(s) 291
PaeI GCATGC 1 cut(s) 291
PfeI GAWTC 1 cut(s) 217
PflMI CCANNNNNTGG 1 cut(s) 495
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 265
PshBI ATTAAT 1 cut(s) 482
Psp5II RGGWCCY 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 391
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 2 cut(s) 228, 265
PspPPI RGGWCCY 1 cut(s) 265
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SaqAI TTAA 5 cut(s) 146, 243, 348, 482, 625
Sau3AI GATC 4 cut(s) 192, 203, 454, 568
Sau96I GGNCC 2 cut(s) 228, 265
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 393
SetI ASST 9 cut(s) 74, 120, 127, 202, 225, 256, 267, 433, 495
SfaNI GCATC 1 cut(s) 247
SfcI CTRYAG 1 cut(s) 616
SinI GGWCC 2 cut(s) 228, 265
SphI GCATGC 1 cut(s) 291
Sse9I AATT 7 cut(s) 8, 50, 131, 247, 372, 479, 483
SspI AATATT 2 cut(s) 186, 515
StyD4I CCNGG 1 cut(s) 391
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 2 cut(s) 151, 547
TasI AATT 7 cut(s) 8, 50, 131, 247, 372, 479, 483
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 5 cut(s) 146, 243, 348, 482, 625
Tru9I TTAA 5 cut(s) 146, 243, 348, 482, 625
TscAI CASTG 2 cut(s) 363, 594
TseFI GTSAC 1 cut(s) 358
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 3 cut(s) 21, 248, 525
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 2 cut(s) 363, 594
Van91I CCANNNNNTGG 1 cut(s) 495
VpaK11BI GGWCC 2 cut(s) 228, 265
VspI ATTAAT 1 cut(s) 482
XapI RAATTY 2 cut(s) 50, 131
XceI RCATGY 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.