RchiOBHm_Chr1g0331451

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
21304862 .. 21310232
5371 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 255 bp
ATGTGGGGGCTTTTGACCATTGGAGCAGTGCTCAATTTTCTTGGATGTGGATTGCTTTGGCTTATAGTCTCACAAAAGATTGCTGCTTTGCCTTTGTGGGTGTGCTTGGCATCACACTTGAGTAAGGAGATTTACGAAGGCTGTCGTGGTTGTGAGTCCAAAGGAAAACTATTGTACTGCTTGCTTATACTGCTGTCATCAAAACAAGGTAGGAGTTGCTGCATGACACTGGATTGTAAAACTTCCTCACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.17

Weight (kDa)

8.69

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 2 - 36 1.2e-06 Nodulin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 176
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 73
ApeKI GCWGC 2 cut(s) 83, 219
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 70, 206
BcoDI GTCTC 1 cut(s) 73
BfmI CTRYAG 1 cut(s) 251
BisI GCNGC 2 cut(s) 84, 220
BlsI GCNGC 2 cut(s) 85, 221
BmsI GCATC 1 cut(s) 119
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpuEI CTTGAG 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 50
BseNI ACTGG 1 cut(s) 234
BseXI GCAGC 2 cut(s) 70, 206
BsiHKAI GWGCWC 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 33
BsrI ACTGG 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 182
BstF5I GGATG 1 cut(s) 50
BstMAI GTCTC 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 251
BstV1I GCAGC 2 cut(s) 70, 206
BtsCI GGATG 1 cut(s) 50
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 33, 227
Cac8I GCNNGC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 175
CviAII CATG 1 cut(s) 223
CviJI RGCY 3 cut(s) 10, 61, 141
CviKI_1 RGCY 3 cut(s) 10, 61, 141
CviQI GTAC 1 cut(s) 175
FaeI CATG 1 cut(s) 226
FaiI YATR 4 cut(s) 65, 188, 224, 253
FatI CATG 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 84, 220
FokI GGATG 1 cut(s) 57
Fsp4HI GCNGC 2 cut(s) 84, 220
GluI GCNGC 2 cut(s) 84, 220
Hin1II CATG 1 cut(s) 226
HinfI GANTC 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 131
HpyCH4V TGCA 1 cut(s) 222
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
Hsp92II CATG 1 cut(s) 226
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 1 cut(s) 215
Lsp1109I GCAGC 2 cut(s) 70, 206
LweI GCATC 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 1 cut(s) 34
MlyI GAGTC 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 190
NlaIII CATG 1 cut(s) 226
PkrI GCNGC 2 cut(s) 85, 221
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SatI GCNGC 2 cut(s) 84, 220
SchI GAGTC 1 cut(s) 164
SduI GDGCHC 1 cut(s) 33
SetI ASST 1 cut(s) 211
SfaNI GCATC 1 cut(s) 119
SfcI CTRYAG 1 cut(s) 251
SgeI CNNG 8 cut(s) 53, 118, 130, 158, 193, 218, 235, 242
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 1 cut(s) 34
TasI AATT 1 cut(s) 34
TatI WGTACW 1 cut(s) 174
TscAI CASTG 2 cut(s) 33, 234
TseI GCWGC 2 cut(s) 83, 219
TspRI CASTG 2 cut(s) 33, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.