Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23443446 .. 23443706

Gene Structure 261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGGTGATTATTTCTCTAATTTATATGAGATCATGTTTCTCTGCTCAAGAATTTGGAAGATAATTTACAGAACGAAGCAGCTGCTTCTGGCCAGAACACTGCAAGCTCTTGTTGGAGGTTTTGGCGTGGCAAGTGTGTACATAAAAATGAGGAAAGATGAAGAAGGTGTAGCAGAGCGACTAGGCCTCTTTGCTTTCAGTTTAAGTTTTCTACTCTCTTCCACGGTTGAAGCATTACCGATATTCCTTCAAGAGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

86

Amino Acids

9.87

Weight (kDa)

8.89

Isoelectric Point (pI)

32.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	10 - 86	1.3e-09	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	256
AciI	CCGC	1 cut(s)	256
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	51
AfaI	GTAC	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	230, 251
AluBI	AGCT	2 cut(s)	82, 107
AluI	AGCT	2 cut(s)	82, 107
AoxI	GGCC	2 cut(s)	90, 184
ApeKI	GCWGC	2 cut(s)	79, 82
ApoI	RAATTY	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	17
BalI	TGGCCA	1 cut(s)	92
BarI	GAAGNNNNNNTAC	2 cut(s)	50, 82
BbvI	GCAGC	2 cut(s)	69, 91
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BfaI	CTAG	1 cut(s)	182
BisI	GCNGC	2 cut(s)	80, 83
BlsI	GCNGC	2 cut(s)	81, 84
BpuEI	CTTGAG	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	69, 91
BshFI	GGCC	2 cut(s)	92, 186
BsnI	GGCC	2 cut(s)	92, 186
Bsp1407I	TGTACA	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	1 cut(s)	256
BspANI	GGCC	2 cut(s)	92, 186
BsrBI	CCGCTC	1 cut(s)	256
BsrGI	TGTACA	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	223
BstAUI	TGTACA	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	105
BstDSI	CCRYGG	1 cut(s)	222
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	69, 91
BsuRI	GGCC	2 cut(s)	92, 186
BtgI	CCRYGG	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	98
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	4 cut(s)	82, 92, 107, 186
CviKI_1	RGCY	4 cut(s)	82, 92, 107, 186
CviQI	GTAC	1 cut(s)	139
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
Eco147I	AGGCCT	1 cut(s)	186
FaeI	CATG	1 cut(s)	37
FaiI	YATR	4 cut(s)	25, 27, 35, 143
FatI	CATG	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	80, 83
Fsp4HI	GCNGC	2 cut(s)	80, 83
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	2 cut(s)	80, 83
HaeIII	GGCC	2 cut(s)	92, 186
Hin1II	CATG	1 cut(s)	37
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188III	TCNNGA	2 cut(s)	48, 251
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	2 cut(s)	158, 257
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	30
LpnPI	CCDG	2 cut(s)	74, 106
Lsp1109I	GCAGC	2 cut(s)	69, 91
MaeI	CTAG	1 cut(s)	182
MalI	GATC	1 cut(s)	32
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	1 cut(s)	30
MboII	GAAGA	3 cut(s)	70, 173, 210
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	3 cut(s)	19, 51, 63
MluNI	TGGCCA	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	3 cut(s)	110, 144, 197
Mox20I	TGGCCA	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	1 cut(s)	203
MslI	CAYNNNNRTG	1 cut(s)	146
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	82
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	186
PkrI	GCNGC	2 cut(s)	81, 84
PvuII	CAGCTG	1 cut(s)	82
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	2 cut(s)	80, 83
Sau3AI	GATC	1 cut(s)	30
SetI	ASST	4 cut(s)	84, 109, 121, 169
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
Sse9I	AATT	3 cut(s)	19, 51, 63
SseBI	AGGCCT	1 cut(s)	186
SsiI	CCGC	1 cut(s)	256
SspMI	CTAG	1 cut(s)	182
StuI	AGGCCT	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	226
TasI	AATT	3 cut(s)	19, 51, 63
TatI	WGTACW	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	2 cut(s)	79, 82
TspDTI	ATGAA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	105
XapI	RAATTY	1 cut(s)	51
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.