Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

23754157 .. 23754462

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAGGGTAAAATGGACATTTCAAAATTTTCTAATTTTTTTCTCTCTTTTTTTAAATTTTTTTTCTCTATACTCTCTCTCTCTCTCTCCCCGATCTGCTCTCTCTCTCCTAGATGCTCCGATCCGCCGTCCCCTTACCTGGCTCGGCTTCGACCCAACCTTCCCTTCCCTCCCCCTCAACTCCCACCTCGACTCCGTCCCCGCAGAGCCCTCCAAGTGGGCCCACCCGCCCTTCTCGGCCCACCGCACCCCCGAAGGCCACATCTTCACCCGCGGCGCCCAGGACGACAAGTGCATCGCCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004046 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0016787 GO:0016810 GO:0016811 GO:0031982 GO:0042802 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0070062 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

101

Amino Acids

11.53

Weight (kDa)

9.1

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M20	PF01546	59 - 100	3.3e-06	Peptidase family M20/M25/M40

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	275
AccII	CGCG	1 cut(s)	273
AciI	CCGC	6 cut(s)	124, 201, 227, 244, 271, 273
AclWI	GGATC	1 cut(s)	115
AcsI	RAATTY	2 cut(s)	25, 55
AcyI	GRCGYC	1 cut(s)	276
AfiI	CCNNNNNNNGG	2 cut(s)	138, 216
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	2 cut(s)	137, 279
AjuI	GAANNNNNNNTTGG	2 cut(s)	148, 180
AlwI	GGATC	1 cut(s)	115
AoxI	GGCC	3 cut(s)	219, 237, 256
ApaI	GGGCCC	1 cut(s)	223
ApoI	RAATTY	2 cut(s)	25, 55
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	3 cut(s)	219, 220, 238
AsuHPI	GGTGA	1 cut(s)	259
BaeGI	GKGCMC	1 cut(s)	223
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	2 cut(s)	210, 223
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	2 cut(s)	139, 281
BfaI	CTAG	2 cut(s)	110, 304
BfoI	RGCGCY	1 cut(s)	279
BisI	GCNGC	1 cut(s)	274
BlsI	GCNGC	1 cut(s)	275
Bme1390I	CCNGG	2 cut(s)	139, 281
BmgT120I	GGNCC	3 cut(s)	219, 220, 238
BmiI	GGNNCC	2 cut(s)	221, 277
BmrFI	CCNGG	2 cut(s)	139, 281
BmsI	GCATC	1 cut(s)	103
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	271, 279
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 216
BseBI	CCWGG	2 cut(s)	139, 281
BseDI	CCNNGG	2 cut(s)	271, 279
BseLI	CCNNNNNNNGG	2 cut(s)	138, 216
BseSI	GKGCMC	1 cut(s)	223
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	3 cut(s)	221, 239, 258
BshNI	GGYRCC	1 cut(s)	275
BslFI	GGGAC	2 cut(s)	114, 182
BslI	CCNNNNNNNGG	2 cut(s)	138, 216
BsmFI	GGGAC	2 cut(s)	114, 182
BsnI	GGCC	3 cut(s)	221, 239, 258
Bsp120I	GGGCCC	1 cut(s)	219
Bsp1286I	GDGCHC	2 cut(s)	210, 223
Bsp143I	GATC	2 cut(s)	92, 120
BspACI	CCGC	6 cut(s)	124, 201, 227, 244, 271, 273
BspANI	GGCC	3 cut(s)	221, 239, 258
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	221, 277
BspPI	GGATC	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	271, 279
BssMI	GATC	2 cut(s)	92, 120
BssNI	GRCGYC	1 cut(s)	276
Bst2UI	CCWGG	2 cut(s)	139, 281
BstACI	GRCGYC	1 cut(s)	276
BstDSI	CCRYGG	1 cut(s)	271
BstFNI	CGCG	1 cut(s)	273
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	2 cut(s)	95, 123
BstMBI	GATC	2 cut(s)	92, 120
BstNI	CCWGG	2 cut(s)	139, 281
BstSCI	CCNGG	2 cut(s)	137, 279
BstSLI	GKGCMC	1 cut(s)	223
BstUI	CGCG	1 cut(s)	273
BsuRI	GGCC	3 cut(s)	221, 239, 258
BtgI	CCRYGG	1 cut(s)	271
BtgZI	GCGATG	1 cut(s)	280
CfoI	GCGC	1 cut(s)	278
Cfr13I	GGNCC	3 cut(s)	219, 220, 238
Cfr42I	CCGCGG	1 cut(s)	274
CviJI	RGCY	6 cut(s)	142, 147, 208, 221, 239, 258
CviKI_1	RGCY	6 cut(s)	142, 147, 208, 221, 239, 258
DinI	GGCGCC	1 cut(s)	277
DpnI	GATC	2 cut(s)	94, 122
DpnII	GATC	2 cut(s)	92, 120
DraI	TTTAAA	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	113
Eco24I	GRGCYC	2 cut(s)	210, 223
EcoRII	CCWGG	2 cut(s)	137, 279
EcoT38I	GRGCYC	2 cut(s)	210, 223
EgeI	GGCGCC	1 cut(s)	277
EheI	GGCGCC	1 cut(s)	277
FaiI	YATR	1 cut(s)	70
FaqI	GGGAC	2 cut(s)	114, 182
FauI	CCCGC	3 cut(s)	208, 234, 278
Fnu4HI	GCNGC	1 cut(s)	274
FriOI	GRGCYC	2 cut(s)	210, 223
Fsp4HI	GCNGC	1 cut(s)	274
FspBI	CTAG	2 cut(s)	110, 304
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	1 cut(s)	274
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	3 cut(s)	221, 239, 258
HhaI	GCGC	1 cut(s)	278
Hin1I	GRCGYC	1 cut(s)	276
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HinfI	GANTC	1 cut(s)	191
HphI	GGTGA	1 cut(s)	259
Hpy188I	TCNGA	1 cut(s)	120
HpyAV	CCTTC	4 cut(s)	169, 174, 241, 248
HpyCH4V	TGCA	1 cut(s)	294
Hsp92I	GRCGYC	1 cut(s)	276
HspAI	GCGC	1 cut(s)	276
KasI	GGCGCC	1 cut(s)	275
KspI	CCGCGG	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	92, 120
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	4 cut(s)	124, 151, 266, 293
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	2 cut(s)	110, 304
MalI	GATC	2 cut(s)	94, 122
MboI	GATC	2 cut(s)	92, 120
MboII	GAAGA	1 cut(s)	256
MhlI	GDGCHC	2 cut(s)	210, 223
MluCI	AATT	3 cut(s)	25, 33, 55
Mly113I	GGCGCC	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	4 cut(s)	179, 185, 197, 220
MseI	TTAA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	273
MspR9I	CCNGG	2 cut(s)	139, 281
MvaI	CCWGG	2 cut(s)	139, 281
MvnI	CGCG	1 cut(s)	273
NarI	GGCGCC	1 cut(s)	276
NdeII	GATC	2 cut(s)	92, 120
NlaIV	GGNNCC	2 cut(s)	221, 277
NmeAIII	GCCGAG	2 cut(s)	123, 215
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	275
PleI	GAGTC	1 cut(s)	185
PluTI	GGCGCC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	185
Psp6I	CCWGG	2 cut(s)	137, 279
PspGI	CCWGG	2 cut(s)	137, 279
PspN4I	GGNNCC	2 cut(s)	221, 277
PspOMI	GGGCCC	1 cut(s)	219
PspPI	GGNCC	3 cut(s)	219, 220, 238
PsyI	GACNNNGTC	1 cut(s)	194
SacII	CCGCGG	1 cut(s)	274
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	1 cut(s)	274
Sau3AI	GATC	2 cut(s)	92, 120
Sau96I	GGNCC	3 cut(s)	219, 220, 238
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	139, 281
SduI	GDGCHC	2 cut(s)	210, 223
SetI	ASST	3 cut(s)	140, 161, 189
SfaNI	GCATC	1 cut(s)	103
SfoI	GGCGCC	1 cut(s)	277
Sfr303I	CCGCGG	1 cut(s)	274
SgrBI	CCGCGG	1 cut(s)	274
Sse9I	AATT	3 cut(s)	25, 33, 55
SsiI	CCGC	6 cut(s)	124, 201, 227, 244, 271, 273
SspDI	GGCGCC	1 cut(s)	275
SspMI	CTAG	2 cut(s)	110, 304
StyD4I	CCNGG	2 cut(s)	137, 279
TaqI	TCGA	2 cut(s)	150, 189
TasI	AATT	3 cut(s)	25, 33, 55
TauI	GCSGC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TspGWI	ACGGA	1 cut(s)	184
Tth111I	GACNNNGTC	1 cut(s)	194
XapI	RAATTY	2 cut(s)	25, 55
XspI	CTAG	2 cut(s)	110, 304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.