RchiOBHm_Chr1g0332741

ABC transporter I family member

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
24546752 .. 24547313
562 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 198 bp
ATGCATAAAGTATCTGATGGGCAGCGACGCCGAGTGCAAATCTGCATGGGACTTCTTCATCCTTTCAAGGTTCTCTTGCTTGATGAGGTAACAGTCGACTTGGATGTTGTTCCTAGGATGGACTTATTAGATTTCTTCAAGGAAGAATGTGAGCAGGTATGGCTTTGTATCATTGATCTCTTTTTGTTAAAGTTATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

65

Amino Acids

7.71

Weight (kDa)

5.13

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 96
AcyI GRCGYC 1 cut(s) 28
AgsI TTSAA 2 cut(s) 67, 139
ApeKI GCWGC 1 cut(s) 22
AspA2I CCTAGG 1 cut(s) 113
AvrII CCTAGG 1 cut(s) 113
BbvI GCAGC 1 cut(s) 34
BccI CCATC 2 cut(s) 11, 112
BfaI CTAG 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 145
BisI GCNGC 1 cut(s) 23
BlnI CCTAGG 1 cut(s) 113
BlsI GCNGC 1 cut(s) 24
BsaHI GRCGYC 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 3 cut(s) 58, 109, 123
BseXI GCAGC 1 cut(s) 34
BslFI GGGAC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 63
Bsp143I GATC 1 cut(s) 175
BspMI ACCTGC 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 1 cut(s) 175
BssNI GRCGYC 1 cut(s) 28
BssT1I CCWWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 94
BstACI GRCGYC 1 cut(s) 28
BstF5I GGATG 3 cut(s) 58, 109, 123
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 34
BtsCI GGATG 3 cut(s) 58, 109, 123
BveI ACCTGC 1 cut(s) 145
CseI GACGC 1 cut(s) 36
CviAII CATG 1 cut(s) 46
CviJI RGCY 1 cut(s) 163
CviKI_1 RGCY 1 cut(s) 163
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 113
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 1 cut(s) 49
FaiI YATR 4 cut(s) 6, 47, 160, 196
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FaqI GGGAC 1 cut(s) 63
FatI CATG 1 cut(s) 45
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 23
FokI GGATG 3 cut(s) 45, 116, 130
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 1 cut(s) 114
GluI GCNGC 1 cut(s) 23
HgaI GACGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 28
Hin1II CATG 1 cut(s) 49
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 97
Hpy99I CGWCG 1 cut(s) 30
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 3 cut(s) 4, 37, 45
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
Hsp92I GRCGYC 1 cut(s) 28
Hsp92II CATG 1 cut(s) 49
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 1 cut(s) 140
Lsp1109I GCAGC 1 cut(s) 34
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 3 cut(s) 47, 127, 155
MnlI CCTC 1 cut(s) 79
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeII GATC 1 cut(s) 175
NlaIII CATG 1 cut(s) 49
NmeAIII GCCGAG 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 6
PkrI GCNGC 1 cut(s) 24
PsiI TTATAA 1 cut(s) 196
SalI GTCGAC 1 cut(s) 95
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 1 cut(s) 175
SetI ASST 3 cut(s) 72, 90, 159
SgeI CNNG 9 cut(s) 44, 58, 79, 88, 92, 112, 126, 151, 167
SspMI CTAG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 1 cut(s) 96
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TseI GCWGC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 47
XmaJI CCTAGG 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 1 cut(s) 114
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.