RchiOBHm_Chr1g0332871

Reticulon-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
24624300 .. 24625144
845 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
ATGCTTTCTCCTTGGCAATCTCTCTCAGATCCATTACCACCTTCAGTGACTCGATTAAGGTTTCATGTTTCGCTTCTCTCACTAATCTATCCATTACCACCTAGAAGTGCCTTTCCTCCATTTCAATCTCATGGATTCGACCGCTTCACCGCCTCCCTATCGTCACCATTCTCGTTCGGAGTCTCCGTTCCTAACCAAATCGGCGTCGCAACTTGCAAATCTTCAGCTTCGCTCCCTCTGCACGAGCTACTGCTACTCTCGCCTTTGCCCAATCCAAGAACGTCCAAGACCCGTCTCGCCGATCGGTTTGAAATGCCCGATGAGTTTGGTCGCTTGTGTGCCCTCCCCAACTTCATCTACAATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

122

Amino Acids

13.5

Weight (kDa)

9.3

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 142, 150
AclWI GGATC 1 cut(s) 23
AcuI CTGAAG 2 cut(s) 27, 207
AcyI GRCGYC 1 cut(s) 204
AgsI TTSAA 2 cut(s) 125, 311
AloI GAACNNNNNNTCC 2 cut(s) 171, 203
AluBI AGCT 2 cut(s) 227, 247
AluI AGCT 2 cut(s) 227, 247
Alw26I GTCTC 2 cut(s) 187, 299
AlwI GGATC 1 cut(s) 23
AsuHPI GGTGA 2 cut(s) 139, 156
BaeGI GKGCMC 1 cut(s) 343
BauI CACGAG 1 cut(s) 242
BcoDI GTCTC 2 cut(s) 187, 299
BfaI CTAG 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
BseDI CCNNGG 1 cut(s) 11
BseMII CTCAG 1 cut(s) 39
BseSI GKGCMC 1 cut(s) 343
BsgI GTGCAG 1 cut(s) 224
Bsh1285I CGRYCG 2 cut(s) 142, 304
BsiEI CGRYCG 2 cut(s) 142, 304
BsmAI GTCTC 2 cut(s) 187, 299
BsmBI CGTCTC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 2 cut(s) 28, 301
BspACI CCGC 2 cut(s) 142, 150
BspCNI CTCAG 1 cut(s) 38
BspPI GGATC 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 2 cut(s) 28, 301
BssNI GRCGYC 1 cut(s) 204
BssSI CACGAG 1 cut(s) 242
BssT1I CCWWGG 1 cut(s) 11
Bst2BI CACGAG 1 cut(s) 242
BstACI GRCGYC 1 cut(s) 204
BstDEI CTNAG 1 cut(s) 25
BstKTI GATC 2 cut(s) 31, 304
BstMAI GTCTC 2 cut(s) 187, 299
BstMBI GATC 2 cut(s) 28, 301
BstMCI CGRYCG 2 cut(s) 142, 304
BstMWI GCNNNNNNNGC 2 cut(s) 238, 259
BstSLI GKGCMC 1 cut(s) 343
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 51
CseI GACGC 1 cut(s) 193
CviAII CATG 2 cut(s) 65, 131
CviJI RGCY 2 cut(s) 227, 247
CviKI_1 RGCY 2 cut(s) 227, 247
DdeI CTNAG 1 cut(s) 25
DpnI GATC 2 cut(s) 30, 303
DpnII GATC 2 cut(s) 28, 301
Eco130I CCWWGG 1 cut(s) 11
Eco57I CTGAAG 2 cut(s) 27, 207
EcoT14I CCWWGG 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 11
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 2 cut(s) 68, 134
FaiI YATR 2 cut(s) 66, 132
FatI CATG 2 cut(s) 64, 130
FspBI CTAG 1 cut(s) 102
HgaI GACGC 1 cut(s) 193
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 2 cut(s) 68, 134
HinfI GANTC 3 cut(s) 49, 135, 180
HphI GGTGA 2 cut(s) 139, 156
Hpy188I TCNGA 2 cut(s) 28, 179
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 2 cut(s) 216, 241
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 259
HpyF3I CTNAG 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 281
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 2 cut(s) 68, 134
Kzo9I GATC 2 cut(s) 28, 301
LmnI GCTCC 1 cut(s) 237
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 2 cut(s) 46, 162
MalI GATC 2 cut(s) 30, 303
MboI GATC 2 cut(s) 28, 301
MboII GAAGA 1 cut(s) 213
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 343
MlyI GAGTC 2 cut(s) 43, 189
MnlI CCTC 4 cut(s) 126, 163, 246, 353
MseI TTAA 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 238, 259
NdeII GATC 2 cut(s) 28, 301
NlaIII CATG 2 cut(s) 68, 134
NmuCI GTSAC 2 cut(s) 46, 162
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 1 cut(s) 135
Ple19I CGATCG 1 cut(s) 304
PleI GAGTC 2 cut(s) 43, 188
PpsI GAGTC 2 cut(s) 43, 188
PsuI RGATCY 1 cut(s) 28
PvuI CGATCG 1 cut(s) 304
SaqAI TTAA 1 cut(s) 56
Sau3AI GATC 2 cut(s) 28, 301
SchI GAGTC 2 cut(s) 43, 189
SduI GDGCHC 1 cut(s) 343
SetI ASST 6 cut(s) 43, 62, 103, 229, 249, 284
SsiI CCGC 2 cut(s) 142, 150
SspMI CTAG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 11
TaiI ACGT 1 cut(s) 284
TaqI TCGA 2 cut(s) 52, 138
TfiI GAWTC 1 cut(s) 135
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 2 cut(s) 46, 162
Tsp45I GTSAC 2 cut(s) 46, 162
TspDTI ATGAA 2 cut(s) 53, 343
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 1 cut(s) 51
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.