Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

25629020 .. 25632620

Gene Structure 3601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAGGATGGAGGAGAGGAGGGAGGAGGAGGAGTTGGAGTGGCGGGAGAGGATGGTAGGTTTGCAAATTCAGCATGAGAGGCAAATGATACCAATGCATGCTGAGGCATGCCAGAACCAAATGCAGATTCTTGGGGTCATGGCTAGGTTTGTCTGTCAATTTTTTGGGTCAATGAATGATGGCCTTGGAGGTGGTTTAGGGACTCTGCCACCTCAAATTTTGCAGAATTTGCAGCATCTATGCGGACTGGGTGACAATGGGAAGCCGGATTCCAGTTCGCCTCCTGACTTGGATATATTGAAGAAGGGAACTGGTGGATGGAAAAAGGTTGTTTCAGCATTTGGGCAGGGTATTTTGCAACCTGATGGAGAAGTTGATAGACCTAAACTAGGGCAAATTGAATTCTCCAATCCCGAAAAGCGTCAACTTTTGAACTGTATCTCTTTACTACTGGCTCCTTACATATCATCTGGCATCTTTTGGGAAATTTTGAAGCTATGGTTGAAGGGGTTTAAGATTAGTATTCTTGATGTCCCTCTATTGTTCAAGGCCAAGATGGACAGATGGACCAAGCCTATTGTTTTTGTATGGGTCGATCCTGAAACACAGCTTCAGAGATTCATGTTGAGGGACAGAACACGTGAGGAACTGAGGATGATGCTCGAAAATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

224

Amino Acids

25.74

Weight (kDa)

6.34

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	100 - 216	1.3e-21	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	43, 243
AclWI	GGATC	1 cut(s)	590
AcsI	RAATTY	5 cut(s)	66, 216, 226, 401, 486
AcuI	CTGAAG	1 cut(s)	596
AcvI	CACGTG	1 cut(s)	641
AfiI	CCNNNNNNNGG	1 cut(s)	389
AflIII	ACRYGT	1 cut(s)	638
AgsI	TTSAA	6 cut(s)	301, 401, 433, 493, 505, 547
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	2 cut(s)	496, 610
AluI	AGCT	2 cut(s)	496, 610
AlwI	GGATC	1 cut(s)	590
AoxI	GGCC	2 cut(s)	181, 549
ApeKI	GCWGC	1 cut(s)	232
ApoI	RAATTY	5 cut(s)	66, 216, 226, 401, 486
AspS9I	GGNCC	1 cut(s)	567
AsuHPI	GGTGA	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	567
BbrPI	CACGTG	1 cut(s)	641
BbvCI	CCTCAGC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	6 cut(s)	46, 173, 312, 359, 550, 558
BfaI	CTAG	2 cut(s)	144, 389
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	567
BmgT120I	GGNCC	1 cut(s)	567
BmiI	GGNNCC	1 cut(s)	456
BmrI	ACTGGG	1 cut(s)	257
BmsI	GCATC	3 cut(s)	244, 483, 648
BmuI	ACTGGG	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	102
BsaAI	YACGTR	1 cut(s)	641
BsaJI	CCNNGG	1 cut(s)	184
BsaXI	ACNNNNNCTCC	4 cut(s)	17, 23, 47, 53
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	4 cut(s)	252, 273, 316, 456
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	4 cut(s)	12, 57, 323, 660
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMII	CTCAG	2 cut(s)	93, 641
BseNI	ACTGG	4 cut(s)	252, 273, 316, 456
BseRI	GAGGAG	5 cut(s)	26, 31, 38, 41, 44
BseXI	GCAGC	1 cut(s)	244
BshFI	GGCC	2 cut(s)	183, 551
BsiSI	CCGG	1 cut(s)	266
BslFI	GGGAC	3 cut(s)	214, 518, 644
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmFI	GGGAC	3 cut(s)	214, 518, 644
BsnI	GGCC	2 cut(s)	183, 551
Bsp143I	GATC	1 cut(s)	595
BspACI	CCGC	2 cut(s)	43, 243
BspANI	GGCC	2 cut(s)	183, 551
BspCNI	CTCAG	2 cut(s)	94, 642
BspLI	GGNNCC	1 cut(s)	456
BspPI	GGATC	1 cut(s)	590
BsrI	ACTGG	4 cut(s)	252, 273, 316, 456
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	1 cut(s)	595
BssT1I	CCWWGG	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	437
BstAPI	GCANNNNNTGC	1 cut(s)	229
BstBAI	YACGTR	1 cut(s)	641
BstC8I	GCNNGC	2 cut(s)	99, 109
BstDEI	CTNAG	2 cut(s)	102, 650
BstENI	CCTNNNNNAGG	1 cut(s)	387
BstF5I	GGATG	4 cut(s)	12, 57, 323, 660
BstKTI	GATC	1 cut(s)	598
BstMBI	GATC	1 cut(s)	595
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 79, 229
BstNSI	RCATGY	2 cut(s)	101, 111
BstV1I	GCAGC	1 cut(s)	244
BsuRI	GGCC	2 cut(s)	183, 551
BtsCI	GGATG	4 cut(s)	12, 57, 323, 660
Cac8I	GCNNGC	2 cut(s)	99, 109
Cfr13I	GGNCC	1 cut(s)	567
CseI	GACGC	1 cut(s)	410
CviAII	CATG	5 cut(s)	74, 98, 108, 139, 622
CviJI	RGCY	8 cut(s)	143, 183, 265, 455, 496, 551, 574, 610
CviKI_1	RGCY	8 cut(s)	143, 183, 265, 455, 496, 551, 574, 610
DdeI	CTNAG	2 cut(s)	102, 650
DpnI	GATC	1 cut(s)	597
DpnII	GATC	1 cut(s)	595
Eco130I	CCWWGG	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	567
Eco57I	CTGAAG	1 cut(s)	596
Eco72I	CACGTG	1 cut(s)	641
EcoNI	CCTNNNNNAGG	1 cut(s)	387
EcoRI	GAATTC	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	184
EcoT22I	ATGCAT	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	5 cut(s)	77, 101, 111, 142, 625
FaqI	GGGAC	3 cut(s)	214, 518, 644
FatI	CATG	5 cut(s)	73, 97, 107, 138, 621
FauI	CCCGC	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	233
FokI	GGATG	4 cut(s)	19, 64, 330, 667
Fsp4HI	GCNGC	1 cut(s)	233
FspBI	CTAG	2 cut(s)	144, 389
GluI	GCNGC	1 cut(s)	233
HaeIII	GGCC	2 cut(s)	183, 551
HapII	CCGG	1 cut(s)	266
HgaI	GACGC	1 cut(s)	410
Hin1II	CATG	5 cut(s)	77, 101, 111, 142, 625
HincII	GTYRAC	1 cut(s)	425
HindII	GTYRAC	1 cut(s)	425
HinfI	GANTC	4 cut(s)	127, 202, 269, 618
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	425
Hpy188I	TCNGA	1 cut(s)	615
Hpy188III	TCNNGA	4 cut(s)	284, 413, 527, 599
Hpy8I	GTNNAC	1 cut(s)	425
HpyAV	CCTTC	2 cut(s)	298, 499
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4IV	ACGT	1 cut(s)	640
HpyCH4V	TGCA	6 cut(s)	64, 97, 124, 223, 232, 358
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 79, 229
HpyF3I	CTNAG	2 cut(s)	102, 650
HpySE526I	ACGT	1 cut(s)	640
Hsp92II	CATG	5 cut(s)	77, 101, 111, 142, 625
Kzo9I	GATC	1 cut(s)	595
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	3 cut(s)	244, 483, 648
MaeI	CTAG	2 cut(s)	144, 389
MaeII	ACGT	1 cut(s)	640
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	597
MboI	GATC	1 cut(s)	595
MboII	GAAGA	1 cut(s)	313
MluCI	AATT	7 cut(s)	66, 158, 216, 226, 396, 401, 486
MlyI	GAGTC	1 cut(s)	196
MmeI	TCCRAC	1 cut(s)	15
Mph1103I	ATGCAT	1 cut(s)	99
MseI	TTAA	1 cut(s)	513
MspI	CCGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	3 cut(s)	70, 79, 229
NdeII	GATC	1 cut(s)	595
NlaIII	CATG	5 cut(s)	77, 101, 111, 142, 625
NlaIV	GGNNCC	1 cut(s)	456
NmuCI	GTSAC	1 cut(s)	251
NsiI	ATGCAT	1 cut(s)	99
NspI	RCATGY	2 cut(s)	101, 111
PaeI	GCATGC	2 cut(s)	101, 111
PfeI	GAWTC	3 cut(s)	127, 269, 618
PkrI	GCNGC	1 cut(s)	234
PleI	GAGTC	1 cut(s)	196
PmaCI	CACGTG	1 cut(s)	641
PmlI	CACGTG	1 cut(s)	641
PpsI	GAGTC	1 cut(s)	196
Ppu21I	YACGTR	1 cut(s)	641
PspCI	CACGTG	1 cut(s)	641
PspN4I	GGNNCC	1 cut(s)	456
PspPI	GGNCC	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	1 cut(s)	233
Sau3AI	GATC	1 cut(s)	595
Sau96I	GGNCC	1 cut(s)	567
SchI	GAGTC	1 cut(s)	196
SfaNI	GCATC	3 cut(s)	244, 483, 648
SinI	GGWCC	1 cut(s)	567
SphI	GCATGC	2 cut(s)	101, 111
Sse9I	AATT	7 cut(s)	66, 158, 216, 226, 396, 401, 486
SsiI	CCGC	2 cut(s)	43, 243
SspMI	CTAG	2 cut(s)	144, 389
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	437
TaiI	ACGT	1 cut(s)	643
TaqI	TCGA	2 cut(s)	594, 663
TasI	AATT	7 cut(s)	66, 158, 216, 226, 396, 401, 486
TfiI	GAWTC	3 cut(s)	127, 269, 618
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	2 cut(s)	188, 610
VpaK11BI	GGWCC	1 cut(s)	567
XagI	CCTNNNNNAGG	1 cut(s)	387
XapI	RAATTY	5 cut(s)	66, 216, 226, 401, 486
XceI	RCATGY	2 cut(s)	101, 111
XspI	CTAG	2 cut(s)	144, 389
Zsp2I	ATGCAT	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.