RchiOBHm_Chr1g0333971

membrane protein At4g09580-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
26083271 .. 26083885
615 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 165 bp
ATGTGCTTCAAAGTGGAGTCCAAAAAGAAGAGGGCTGGCCTTGCTCTTGGGGATCTTAAGTCAGTCAAGGACCTCTACGATTTTAAAACATTATTTGTGCTTTTCCTTATTGGTTCAGTGATTATATTTCCAACACTTTTGAAGAGAAAGCGAATCTATGAATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

54

Amino Acids

6.28

Weight (kDa)

9.93

Isoelectric Point (pI)

25.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 60
AflII CTTAAG 1 cut(s) 56
AgsI TTSAA 2 cut(s) 10, 142
AlwI GGATC 1 cut(s) 60
AoxI GGCC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 70
AvaII GGWCC 1 cut(s) 70
BfrI CTTAAG 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BshFI GGCC 1 cut(s) 39
BsnI GGCC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 52
BspANI GGCC 1 cut(s) 39
BspPI GGATC 1 cut(s) 60
BspTI CTTAAG 1 cut(s) 56
BssMI GATC 1 cut(s) 52
Bst6I CTCTTC 2 cut(s) 23, 137
BstAFI CTTAAG 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 37
BstKTI GATC 1 cut(s) 55
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 70
CviJI RGCY 2 cut(s) 35, 39
CviKI_1 RGCY 2 cut(s) 35, 39
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
DraI TTTAAA 1 cut(s) 85
Eam1104I CTCTTC 2 cut(s) 23, 137
EarI CTCTTC 2 cut(s) 23, 137
Eco47I GGWCC 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 70
FaiI YATR 2 cut(s) 125, 159
HaeIII GGCC 1 cut(s) 39
HinfI GANTC 2 cut(s) 17, 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
Kzo9I GATC 1 cut(s) 52
LpnPI CCDG 1 cut(s) 21
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 2 cut(s) 40, 154
MflI RGATCY 1 cut(s) 52
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 2 cut(s) 24, 83
MseI TTAA 2 cut(s) 57, 84
MspCI CTTAAG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 1 cut(s) 52
PfeI GAWTC 1 cut(s) 153
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PpuMI RGGWCCY 1 cut(s) 70
Psp5II RGGWCCY 1 cut(s) 70
PspPI GGNCC 1 cut(s) 70
PspPPI RGGWCCY 1 cut(s) 70
PsuI RGATCY 1 cut(s) 52
SaqAI TTAA 2 cut(s) 57, 84
Sau3AI GATC 1 cut(s) 52
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 26
SetI ASST 1 cut(s) 75
SgeI CNNG 4 cut(s) 48, 53, 59, 79
SinI GGWCC 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
TfiI GAWTC 1 cut(s) 153
Tru1I TTAA 2 cut(s) 57, 84
Tru9I TTAA 2 cut(s) 57, 84
TscAI CASTG 1 cut(s) 123
TspRI CASTG 1 cut(s) 123
Vha464I CTTAAG 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.