Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

26583485 .. 26584766

Gene Structure 1282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTATATTTCAGCTGTGACTCAGCCATTTGCGGAGCACGTAACATATTTCATGCTCTTCGCAATACCAATGTTGGCAACTCTGTTGATCGGAACAGCCTCCATCTCATCTTATTTTGCTTATAATACTTATATCGAGTTTATGAACAACTTGGGACACTGCAATTTCGATCTGGTGATATTCTACACGAATATTCTTCACTCAGGAAAGAGGGAATCACCTGATGATGTGGTTCATCTAACCCATTTAACAACAACTAAATCCATATACCGACTCCCACTGGCATTTGCTTCCTTGGCCTCTAATCCACACACATCAACATGGTACTTATGGTTGTTGTGGCCGTACTTGCTCTCATGGCAAAATGAAGCTATAAACAAAGCGATTGAGGATGGGATACTTGAAGCTGAGCAAATGGGTGTCAAAGTTATAAGTTTAGGTCTCTTTAATCGGGCAACTATAGTGTGCGTGTGTAGGTTTAGACCTCTATTATTTCTGTCATCAATTCACCTATCTATTTCACATTTTATTCCCTATCTAATTAAGCTCACTTATGTATCTAAACTTCTTGACTTACTCTGCGTGGTATGTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

198

Amino Acids

22.58

Weight (kDa)

6.69

Isoelectric Point (pI)

29.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	123, 431
AciI	CCGC	1 cut(s)	32
AcoI	YGGCCR	1 cut(s)	341
AfaI	GTAC	3 cut(s)	326, 347, 592
AgsI	TTSAA	1 cut(s)	404
AluBI	AGCT	4 cut(s)	14, 371, 407, 547
AluI	AGCT	4 cut(s)	14, 371, 407, 547
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	446
AoxI	GGCC	2 cut(s)	297, 341
AsuHPI	GGTGA	3 cut(s)	187, 210, 500
BaeI	ACNNNNGTAYC	2 cut(s)	540, 573
BarI	GAAGNNNNNNTAC	2 cut(s)	549, 581
Bbv12I	GWGCWC	1 cut(s)	39
BccI	CCATC	2 cut(s)	110, 386
BceAI	ACGGC	1 cut(s)	328
BciVI	GTATCC	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	446
BfmI	CTRYAG	1 cut(s)	459
BfuI	GTATCC	1 cut(s)	390
BlpI	GCTNAGC	1 cut(s)	408
Bpu1102I	GCTNAGC	1 cut(s)	408
BsaAI	YACGTR	2 cut(s)	40, 594
BsaI	GGTCTC	1 cut(s)	446
BsaJI	CCNNGG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	397
BseMII	CTCAG	3 cut(s)	35, 216, 399
BseNI	ACTGG	1 cut(s)	285
BshFI	GGCC	2 cut(s)	299, 343
BsiHKAI	GWGCWC	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	168
BsmAI	GTCTC	1 cut(s)	446
BsmFI	GGGAC	1 cut(s)	168
BsnI	GGCC	2 cut(s)	299, 343
Bso31I	GGTCTC	1 cut(s)	446
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	87, 169
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	2 cut(s)	299, 343
BspCNI	CTCAG	3 cut(s)	34, 215, 400
BspQI	GCTCTTC	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	2 cut(s)	87, 169
BssT1I	CCWWGG	1 cut(s)	294
Bst6I	CTCTTC	1 cut(s)	62
BstBAI	YACGTR	2 cut(s)	40, 594
BstDEI	CTNAG	3 cut(s)	21, 202, 408
BstF5I	GGATG	1 cut(s)	397
BstKTI	GATC	2 cut(s)	90, 172
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	2 cut(s)	87, 169
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 349, 358
BstSFI	CTRYAG	1 cut(s)	459
BstSNI	TACGTA	1 cut(s)	594
BsuI	GTATCC	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	299, 343
BtsCI	GGATG	1 cut(s)	397
BtsI	GCAGTG	1 cut(s)	157
BtsIMutI	CAGTG	2 cut(s)	157, 278
Csp6I	GTAC	3 cut(s)	325, 346, 591
CviAII	CATG	3 cut(s)	52, 321, 357
CviJI	RGCY	8 cut(s)	14, 25, 98, 299, 343, 371, 407, 547
CviKI_1	RGCY	8 cut(s)	14, 25, 98, 299, 343, 371, 407, 547
CviQI	GTAC	3 cut(s)	325, 346, 591
DdeI	CTNAG	3 cut(s)	21, 202, 408
DpnI	GATC	2 cut(s)	89, 171
DpnII	GATC	2 cut(s)	87, 169
EaeI	YGGCCR	1 cut(s)	341
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco105I	TACGTA	1 cut(s)	594
Eco130I	CCWWGG	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	446
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	3 cut(s)	55, 324, 360
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	3 cut(s)	51, 320, 356
FokI	GGATG	1 cut(s)	404
HaeIII	GGCC	2 cut(s)	299, 343
Hin1II	CATG	3 cut(s)	55, 324, 360
HinfI	GANTC	3 cut(s)	19, 215, 273
HphI	GGTGA	3 cut(s)	187, 210, 500
Hpy188I	TCNGA	1 cut(s)	92
Hpy188III	TCNNGA	2 cut(s)	204, 569
HpyCH4IV	ACGT	2 cut(s)	39, 593
HpyCH4V	TGCA	1 cut(s)	162
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 349, 358
HpyF3I	CTNAG	3 cut(s)	21, 202, 408
HpySE526I	ACGT	2 cut(s)	39, 593
Hsp92II	CATG	3 cut(s)	55, 324, 360
Kzo9I	GATC	2 cut(s)	87, 169
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	4 cut(s)	158, 189, 234, 266
MaeII	ACGT	2 cut(s)	39, 593
MaeIII	GTNAC	2 cut(s)	16, 40
MalI	GATC	2 cut(s)	89, 171
MboI	GATC	2 cut(s)	87, 169
MboII	GAAGA	2 cut(s)	49, 188
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	3 cut(s)	163, 504, 540
MlyI	GAGTC	2 cut(s)	13, 267
MnlI	CCTC	5 cut(s)	109, 204, 310, 382, 495
MseI	TTAA	3 cut(s)	248, 447, 543
MslI	CAYNNNNRTG	1 cut(s)	319
MspA1I	CMGCKG	1 cut(s)	14
MwoI	GCNNNNNNNGC	3 cut(s)	296, 349, 358
NdeII	GATC	2 cut(s)	87, 169
NlaIII	CATG	3 cut(s)	55, 324, 360
NmuCI	GTSAC	1 cut(s)	16
PciSI	GCTCTTC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	215
PleI	GAGTC	2 cut(s)	13, 267
PpsI	GAGTC	2 cut(s)	13, 267
Ppu21I	YACGTR	2 cut(s)	40, 594
PsiI	TTATAA	2 cut(s)	123, 431
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	3 cut(s)	326, 347, 592
RsaNI	GTAC	3 cut(s)	325, 346, 591
RseI	CAYNNNNRTG	1 cut(s)	319
SapI	GCTCTTC	1 cut(s)	62
SaqAI	TTAA	3 cut(s)	248, 447, 543
Sau3AI	GATC	2 cut(s)	87, 169
SchI	GAGTC	2 cut(s)	13, 267
SduI	GDGCHC	1 cut(s)	39
SfcI	CTRYAG	1 cut(s)	459
SmiMI	CAYNNNNRTG	1 cut(s)	319
SnaBI	TACGTA	1 cut(s)	594
Sse9I	AATT	3 cut(s)	163, 504, 540
SsiI	CCGC	1 cut(s)	32
SspI	AATATT	1 cut(s)	193
StyI	CCWWGG	1 cut(s)	294
TaiI	ACGT	2 cut(s)	42, 596
TaqI	TCGA	2 cut(s)	135, 168
TasI	AATT	3 cut(s)	163, 504, 540
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	3 cut(s)	248, 447, 543
Tru9I	TTAA	3 cut(s)	248, 447, 543
TscAI	CASTG	2 cut(s)	164, 285
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	4 cut(s)	40, 158, 224, 381
TspRI	CASTG	2 cut(s)	164, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.