RchiOBHm_Chr1g0335071

exocyst complex component

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
27263803 .. 27265706
1904 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
ATGGAAAGAAAGTCACTCAGTTGCAATATTGAAAGGCGGCAAAAAAAAAACGTTTCATTTTCCTCAAAAACGTCGTCGTTGTATATAGAGAGAGAGAGCAGAAGATCGAAGAAGGATGATGGTGGAGGATCTTGGTGTTGCCTCTGCCGGACCTCCTTCAGTCTATCGCTTCCATTAAGGCCGATTACATTGCTCGCCAACAGGCTATGTCAAGAATGCCAAACTTTGATTGAAAACCATGATAAGATAAAGCTTCTCAGCAACGCGAGGAATAACTTGAACACAACCTTAAAGGATGTCGAGGGTATGATGTCAATCTCTGTTGTAGCCTCTGCGGCTCGCGATTCTTTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

13.35

Weight (kDa)

9.35

Isoelectric Point (pI)

63.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 266, 342
AciI CCGC 2 cut(s) 37, 335
AclI AACGTT 1 cut(s) 51
AclWI GGATC 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 142
AgsI TTSAA 3 cut(s) 32, 233, 280
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
AlwI GGATC 1 cut(s) 136
AoxI GGCC 1 cut(s) 179
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AspS9I GGNCC 1 cut(s) 150
AvaII GGWCC 1 cut(s) 150
BccI CCATC 1 cut(s) 113
BcgI CGANNNNNNTGC 2 cut(s) 172, 206
BglI GCCNNNNNGGC 1 cut(s) 335
BisI GCNGC 2 cut(s) 38, 336
BlsI GCNGC 2 cut(s) 39, 337
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 314
Bse3DI GCAATG 1 cut(s) 188
Bse8I GATNNNNATC 1 cut(s) 314
BseGI GGATG 2 cut(s) 121, 301
BseJI GATNNNNATC 1 cut(s) 314
BseMI GCAATG 1 cut(s) 188
BseMII CTCAG 2 cut(s) 31, 271
Bsh1236I CGCG 2 cut(s) 266, 342
BshFI GGCC 1 cut(s) 181
BsiSI CCGG 1 cut(s) 148
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 1 cut(s) 181
Bsp143I GATC 2 cut(s) 104, 128
Bsp68I TCGCGA 1 cut(s) 342
BspACI CCGC 2 cut(s) 37, 335
BspANI GGCC 1 cut(s) 181
BspCNI CTCAG 2 cut(s) 30, 270
BspFNI CGCG 2 cut(s) 266, 342
BspPI GGATC 1 cut(s) 136
BsrDI GCAATG 1 cut(s) 188
BssMI GATC 2 cut(s) 104, 128
BstC8I GCNNGC 2 cut(s) 195, 340
BstDEI CTNAG 2 cut(s) 17, 257
BstF5I GGATG 2 cut(s) 121, 301
BstFNI CGCG 2 cut(s) 266, 342
BstKTI GATC 2 cut(s) 107, 131
BstMBI GATC 2 cut(s) 104, 128
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstUI CGCG 2 cut(s) 266, 342
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BsuRI GGCC 1 cut(s) 181
BtsCI GGATG 2 cut(s) 121, 301
BtuMI TCGCGA 1 cut(s) 342
Cac8I GCNNGC 2 cut(s) 195, 340
Cfr13I GGNCC 1 cut(s) 150
CviAII CATG 1 cut(s) 239
CviJI RGCY 5 cut(s) 181, 205, 253, 329, 338
CviKI_1 RGCY 5 cut(s) 181, 205, 253, 329, 338
DdeI CTNAG 2 cut(s) 17, 257
DpnI GATC 2 cut(s) 106, 130
DpnII GATC 2 cut(s) 104, 128
Eco47I GGWCC 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 142
FaeI CATG 1 cut(s) 242
FaiI YATR 5 cut(s) 84, 86, 208, 240, 308
FatI CATG 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 38, 336
FokI GGATG 2 cut(s) 128, 308
Fsp4HI GCNGC 2 cut(s) 38, 336
GluI GCNGC 2 cut(s) 38, 336
HaeIII GGCC 1 cut(s) 181
HapII CCGG 1 cut(s) 148
Hin1II CATG 1 cut(s) 242
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 1 cut(s) 344
HpaII CCGG 1 cut(s) 148
Hpy188III TCNNGA 2 cut(s) 212, 341
Hpy99I CGWCG 2 cut(s) 76, 79
HpyAV CCTTC 2 cut(s) 106, 166
HpyCH4IV ACGT 2 cut(s) 51, 71
HpyCH4V TGCA 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 2 cut(s) 17, 257
HpySE526I ACGT 2 cut(s) 51, 71
Hsp92II CATG 1 cut(s) 242
Kzo9I GATC 2 cut(s) 104, 128
LpnPI CCDG 2 cut(s) 161, 187
MaeII ACGT 2 cut(s) 51, 71
MaeIII GTNAC 1 cut(s) 12
MalI GATC 2 cut(s) 106, 130
MboI GATC 2 cut(s) 104, 128
MboII GAAGA 2 cut(s) 114, 121
MflI RGATCY 1 cut(s) 128
MnlI CCTC 7 cut(s) 73, 119, 152, 163, 261, 295, 340
MseI TTAA 2 cut(s) 176, 290
MspI CCGG 1 cut(s) 148
Mva1269I GAATGC 1 cut(s) 221
MvnI CGCG 2 cut(s) 266, 342
MwoI GCNNNNNNNGC 1 cut(s) 335
NdeII GATC 2 cut(s) 104, 128
NlaIII CATG 1 cut(s) 242
NmuCI GTSAC 1 cut(s) 12
NruI TCGCGA 1 cut(s) 342
PctI GAATGC 1 cut(s) 221
PfeI GAWTC 1 cut(s) 344
PkrI GCNGC 2 cut(s) 39, 337
Psp1406I AACGTT 1 cut(s) 51
PspPI GGNCC 1 cut(s) 150
PsuI RGATCY 1 cut(s) 128
RruI TCGCGA 1 cut(s) 342
SaqAI TTAA 2 cut(s) 176, 290
SatI GCNGC 2 cut(s) 38, 336
Sau3AI GATC 2 cut(s) 104, 128
Sau96I GGNCC 1 cut(s) 150
SetI ASST 5 cut(s) 54, 74, 155, 255, 290
SinI GGWCC 1 cut(s) 150
SsiI CCGC 2 cut(s) 37, 335
SspI AATATT 1 cut(s) 28
TaiI ACGT 2 cut(s) 54, 74
TaqI TCGA 2 cut(s) 107, 300
TauI GCSGC 2 cut(s) 40, 338
TfiI GAWTC 1 cut(s) 344
Tru1I TTAA 2 cut(s) 176, 290
Tru9I TTAA 2 cut(s) 176, 290
TseFI GTSAC 1 cut(s) 12
Tsp45I GTSAC 1 cut(s) 12
TspDTI ATGAA 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.