Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

28931177 .. 28932770

Gene Structure 1594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTTTATGGGGTTGATCCACCGGGCAAAGCTTGTGTTAGCAGTGATTTTGGTGCAGCTCAGGTATGCTGGGCTTTTGATAATCTCTGTGTTTGCTTTAAAGAAGGGATTGAGTCCTTACACATTCATCGTGTACCAAATGGCCATTGCCACTATTGTTTTAGCTCCATTTGCATTTATTCTGGAGAGGAATTCAAGATCTCCGATCGATGACTTGGTCCATCACTGCAAAGATAATGTTGCTGAGCCTTTTCGATCCTGTGCACCTGACCAGAACCTCTACTACATGGGAATGAAGAATTCGAGTGCAACGTTCACTTCTGCAATGTTGAATATGCTGCCTGCTTTTGCATTTTGTCTAGCCTGGATTTTTAGTGTTATCGGAGCAGCTTTAATCATCATTGGTCTGTATCTTGTTCTCTGGGGAAAAGCAAAGGATCAGTCTCCTCCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

151

Amino Acids

16.73

Weight (kDa)

9.27

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	12 - 140	1e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	311
AclWI	GGATC	3 cut(s)	10, 249, 444
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	2 cut(s)	190, 298
AfaI	GTAC	1 cut(s)	134
AgsI	TTSAA	2 cut(s)	195, 331
AjnI	CCWGG	1 cut(s)	362
AluBI	AGCT	4 cut(s)	31, 58, 164, 389
AluI	AGCT	4 cut(s)	31, 58, 164, 389
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	1 cut(s)	447
Alw44I	GTGCAC	1 cut(s)	261
AlwI	GGATC	3 cut(s)	10, 249, 444
AoxI	GGCC	1 cut(s)	141
ApaLI	GTGCAC	1 cut(s)	261
ApeKI	GCWGC	3 cut(s)	55, 337, 386
ApoI	RAATTY	2 cut(s)	190, 298
ArsI	GACNNNNNNTTYG	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	217
AsuC2I	CCSGG	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	217
BaeGI	GKGCMC	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	265
BbvI	GCAGC	3 cut(s)	67, 324, 398
BccI	CCATC	1 cut(s)	228
BciT130I	CCWGG	1 cut(s)	364
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	1 cut(s)	359
BglII	AGATCT	1 cut(s)	197
BisI	GCNGC	3 cut(s)	56, 338, 387
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	3 cut(s)	57, 339, 388
Bme1390I	CCNGG	2 cut(s)	23, 364
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	217
BmrFI	CCNGG	2 cut(s)	23, 364
BpmI	CTGGAG	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	59
Bpu1102I	GCTNAGC	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	23
Bsa29I	ATCGAT	1 cut(s)	207
Bse3DI	GCAATG	2 cut(s)	144, 330
BseBI	CCWGG	1 cut(s)	364
BseCI	ATCGAT	1 cut(s)	207
BseMI	GCAATG	2 cut(s)	144, 330
BseMII	CTCAG	2 cut(s)	73, 234
BseRI	GAGGAG	1 cut(s)	435
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	3 cut(s)	67, 324, 398
BseYI	CCCAGC	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	207
BsiEI	CGRYCG	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	447
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	5 cut(s)	15, 197, 204, 254, 436
Bsp1720I	GCTNAGC	1 cut(s)	243
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	2 cut(s)	72, 235
BspDI	ATCGAT	1 cut(s)	207
BspPI	GGATC	3 cut(s)	10, 249, 444
BsrDI	GCAATG	2 cut(s)	144, 330
BssMI	GATC	5 cut(s)	15, 197, 204, 254, 436
Bst2UI	CCWGG	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	2 cut(s)	59, 243
BstKTI	GATC	5 cut(s)	18, 200, 207, 257, 439
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	5 cut(s)	15, 197, 204, 254, 436
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	364
BstSCI	CCNGG	2 cut(s)	21, 362
BstSLI	GKGCMC	1 cut(s)	265
BstV1I	GCAGC	3 cut(s)	67, 324, 398
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
Bsu15I	ATCGAT	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	143
BsuTUI	ATCGAT	1 cut(s)	207
BtsI	GCAGTG	2 cut(s)	48, 223
BtsIMutI	CAGTG	2 cut(s)	48, 223
Cac8I	GCNNGC	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	217
ClaI	ATCGAT	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	1 cut(s)	286
CviJI	RGCY	8 cut(s)	31, 58, 73, 143, 164, 247, 362, 389
CviKI_1	RGCY	8 cut(s)	31, 58, 73, 143, 164, 247, 362, 389
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	2 cut(s)	59, 243
DpnI	GATC	5 cut(s)	17, 199, 206, 256, 438
DpnII	GATC	5 cut(s)	15, 197, 204, 254, 436
DraI	TTTAAA	1 cut(s)	99
EaeI	YGGCCR	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	217
EcoRI	GAATTC	2 cut(s)	190, 298
EcoRII	CCWGG	1 cut(s)	362
FaeI	CATG	1 cut(s)	289
FaiI	YATR	5 cut(s)	8, 66, 287, 335, 454
FatI	CATG	1 cut(s)	285
Fnu4HI	GCNGC	3 cut(s)	56, 338, 387
Fsp4HI	GCNGC	3 cut(s)	56, 338, 387
FspBI	CTAG	1 cut(s)	359
GluI	GCNGC	3 cut(s)	56, 338, 387
GsaI	CCCAGC	1 cut(s)	72
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	1 cut(s)	289
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	22
Hpy166II	GTNNAC	3 cut(s)	133, 263, 315
Hpy188I	TCNGA	2 cut(s)	204, 383
Hpy188III	TCNNGA	2 cut(s)	182, 195
Hpy8I	GTNNAC	3 cut(s)	133, 263, 315
HpyAV	CCTTC	1 cut(s)	97
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	7 cut(s)	55, 173, 228, 263, 308, 323, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	2 cut(s)	59, 243
HpySE526I	ACGT	1 cut(s)	311
Hsp92II	CATG	1 cut(s)	289
Kzo9I	GATC	5 cut(s)	15, 197, 204, 254, 436
LmnI	GCTCC	2 cut(s)	169, 383
Lsp1109I	GCAGC	3 cut(s)	67, 324, 398
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	1 cut(s)	311
MalI	GATC	5 cut(s)	17, 199, 206, 256, 438
MboI	GATC	5 cut(s)	15, 197, 204, 254, 436
MboII	GAAGA	1 cut(s)	307
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	1 cut(s)	265
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	2 cut(s)	190, 298
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	121
MnlI	CCTC	3 cut(s)	180, 287, 456
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	2 cut(s)	98, 392
MslI	CAYNNNNRTG	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	143
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	2 cut(s)	23, 364
MvaI	CCWGG	1 cut(s)	364
MwoI	GCNNNNNNNGC	1 cut(s)	170
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	5 cut(s)	15, 197, 204, 254, 436
NlaIII	CATG	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	308
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	57, 339, 388
Ple19I	CGATCG	1 cut(s)	207
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
Psp1406I	AACGTT	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	362
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	362
PspPI	GGNCC	1 cut(s)	217
PsrI	GAACNNNNNNTAC	2 cut(s)	266, 298
PsuI	RGATCY	1 cut(s)	197
PsyI	GACNNNGTC	1 cut(s)	215
PvuI	CGATCG	1 cut(s)	207
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	98, 392
SatI	GCNGC	3 cut(s)	56, 338, 387
Sau3AI	GATC	5 cut(s)	15, 197, 204, 254, 436
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	2 cut(s)	23, 364
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	8 cut(s)	33, 60, 65, 166, 268, 279, 314, 391
SinI	GGWCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	190, 298
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	2 cut(s)	21, 362
TaiI	ACGT	1 cut(s)	314
TaqI	TCGA	3 cut(s)	207, 253, 302
TasI	AATT	2 cut(s)	190, 298
Tru1I	TTAA	2 cut(s)	98, 392
Tru9I	TTAA	2 cut(s)	98, 392
TscAI	CASTG	2 cut(s)	48, 230
TseI	GCWGC	3 cut(s)	55, 337, 386
TspDTI	ATGAA	2 cut(s)	115, 308
TspRI	CASTG	2 cut(s)	48, 230
Tth111I	GACNNNGTC	1 cut(s)	215
VneI	GTGCAC	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	2 cut(s)	190, 298
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.