RchiOBHm_Chr1g0337901

Probable protein Pop3

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
29893794 .. 29894680
887 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 489 bp
ATGGAGGAAGCGAAGGGAGTGGTGAAGCATGTATTGTTAGCCGAGTTCAAGGAAGGAGTGACTGAGTCGGAGATTGAGCAACTCATCGGAGGCTTTGCCAACCTCGTCAATCTCATTGATCCCATGGAGTCCTTCCACTGGTACTACCCACTCTACTATTTTCCCGCACACTCAGCTTGTGATGTAGTTGATTCTGTTTTTAGCCTACTTTTGGTGATTTGGTGCTTGTTGGGATTCAAGCATCCAACTTTAGCTAAATTTGTAGTTAAATGGGCTGAGTTTTGCAGGAAACCTAAAATTCTAGGCTTGAATCTGAAACCCAAAATGCTAGGCTTGAACCTTGATGACCCTGTTGGTATTGTCAGTTTCACTATTTTCATGTTTGGCATAAAATTGGGAAAGGACGTGAGCATTGAGAACCTGCATCAAGGTTCACTCATATCTTTGAGTCCAGCTTTAAGAGTAATGAGGCTGTTGCGGAGTATCTAG

Protein Analysis

162

Amino Acids

18.27

Weight (kDa)

6.96

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 429
AciI CCGC 2 cut(s) 165, 478
AclWI GGATC 1 cut(s) 113
AcsI RAATTY 2 cut(s) 257, 297
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 2 cut(s) 138, 211
AgsI TTSAA 4 cut(s) 49, 238, 310, 337
AjiI CACGTC 1 cut(s) 406
AluBI AGCT 3 cut(s) 176, 254, 455
AluI AGCT 3 cut(s) 176, 254, 455
AlwI GGATC 1 cut(s) 113
ApoI RAATTY 2 cut(s) 257, 297
AsuHPI GGTGA 2 cut(s) 34, 226
BfaI CTAG 3 cut(s) 302, 329, 487
BfuAI ACCTGC 1 cut(s) 429
BmgBI CACGTC 1 cut(s) 406
BmsI GCATC 2 cut(s) 250, 433
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 211
Bse1I ACTGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 2 cut(s) 138, 211
BseMII CTCAG 3 cut(s) 54, 186, 267
BseNI ACTGG 1 cut(s) 143
BslI CCNNNNNNNGG 2 cut(s) 138, 211
Bsp143I GATC 1 cut(s) 118
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 2 cut(s) 165, 478
BspCNI CTCAG 3 cut(s) 55, 185, 268
BspMI ACCTGC 1 cut(s) 429
BspPI GGATC 1 cut(s) 113
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 123
BstDEI CTNAG 3 cut(s) 63, 172, 276
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 32
BtgI CCRYGG 1 cut(s) 123
BtrI CACGTC 1 cut(s) 406
BtsCI GGATG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 136
BveI ACCTGC 1 cut(s) 429
Csp6I GTAC 1 cut(s) 142
CviAII CATG 3 cut(s) 29, 124, 379
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 3 cut(s) 63, 172, 276
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 3 cut(s) 32, 127, 382
FaiI YATR 5 cut(s) 30, 125, 380, 389, 440
FatI CATG 3 cut(s) 28, 123, 378
FauI CCCGC 1 cut(s) 172
FokI GGATG 1 cut(s) 228
FspBI CTAG 3 cut(s) 302, 329, 487
Hin1II CATG 3 cut(s) 32, 127, 382
HinfI GANTC 6 cut(s) 65, 128, 191, 234, 310, 448
HphI GGTGA 2 cut(s) 34, 226
Hpy166II GTNNAC 1 cut(s) 434
Hpy188I TCNGA 3 cut(s) 70, 89, 315
Hpy8I GTNNAC 1 cut(s) 434
HpyAV CCTTC 3 cut(s) 7, 47, 142
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 2 cut(s) 285, 424
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 3 cut(s) 63, 172, 276
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 3 cut(s) 32, 127, 382
Kzo9I GATC 1 cut(s) 118
LpnPI CCDG 5 cut(s) 124, 271, 363, 434, 465
LweI GCATC 2 cut(s) 250, 433
MaeI CTAG 3 cut(s) 302, 329, 487
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 1 cut(s) 58
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MluCI AATT 3 cut(s) 257, 297, 392
MlyI GAGTC 3 cut(s) 74, 137, 457
MmeI TCCRAC 2 cut(s) 48, 269
MnlI CCTC 3 cut(s) 83, 113, 462
MseI TTAA 2 cut(s) 267, 458
MwoI GCNNNNNNNGC 1 cut(s) 173
NcoI CCATGG 1 cut(s) 123
NdeII GATC 1 cut(s) 118
NlaIII CATG 3 cut(s) 32, 127, 382
NmeAIII GCCGAG 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 58
NspI RCATGY 1 cut(s) 32
PfeI GAWTC 3 cut(s) 191, 234, 310
PflFI GACNNNGTC 1 cut(s) 64
PleI GAGTC 3 cut(s) 73, 136, 456
PpsI GAGTC 3 cut(s) 73, 136, 456
PsyI GACNNNGTC 1 cut(s) 64
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SaqAI TTAA 2 cut(s) 267, 458
Sau3AI GATC 1 cut(s) 118
SchI GAGTC 3 cut(s) 74, 137, 457
SetI ASST 9 cut(s) 105, 178, 256, 295, 342, 408, 423, 433, 457
SfaNI GCATC 2 cut(s) 250, 433
Sse9I AATT 3 cut(s) 257, 297, 392
SsiI CCGC 2 cut(s) 165, 478
SspMI CTAG 3 cut(s) 302, 329, 487
StyI CCWWGG 1 cut(s) 123
TaiI ACGT 1 cut(s) 408
TasI AATT 3 cut(s) 257, 297, 392
TfiI GAWTC 3 cut(s) 191, 234, 310
Tru1I TTAA 2 cut(s) 267, 458
Tru9I TTAA 2 cut(s) 267, 458
TscAI CASTG 1 cut(s) 143
TseFI GTSAC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 367
TspRI CASTG 1 cut(s) 143
Tth111I GACNNNGTC 1 cut(s) 64
XapI RAATTY 2 cut(s) 257, 297
XceI RCATGY 1 cut(s) 32
XspI CTAG 3 cut(s) 302, 329, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.