Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

29897904 .. 29898056

Gene Structure 153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGGTGGAATCTAGATTAAGCATCTCTAAACCTGATTTGACTCCATGGTCGAATGTTGTTGCGACTAGCTTTCTTGAAGCTGGAATTTGCCCCTATAATGGTTTTAGTTTGGAGCATATTCAGGGACAAAGATTGGTGCTAGTTGTACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007267 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009987 GO:0010430 GO:0016829 GO:0016830 GO:0016832 GO:0019395 GO:0019752 GO:0023052 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0046593 GO:0048037 GO:0048229 GO:0048856 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 map00260 map01100

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

50

Amino Acids

5.56

Weight (kDa)

6.52

Isoelectric Point (pI)

20.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	84
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	77
AluBI	AGCT	2 cut(s)	69, 80
AluI	AGCT	2 cut(s)	69, 80
ApoI	RAATTY	1 cut(s)	84
BfaI	CTAG	3 cut(s)	12, 66, 140
BmsI	GCATC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	138
Bsp19I	CCATGG	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	44
BstDSI	CCRYGG	1 cut(s)	44
BtgI	CCRYGG	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	1 cut(s)	45
CviJI	RGCY	2 cut(s)	69, 80
CviKI_1	RGCY	2 cut(s)	69, 80
CviQI	GTAC	1 cut(s)	146
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	1 cut(s)	48
FaiI	YATR	3 cut(s)	46, 96, 117
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	1 cut(s)	44
FspBI	CTAG	3 cut(s)	12, 66, 140
Hin1II	CATG	1 cut(s)	48
HinfI	GANTC	2 cut(s)	8, 40
Hpy188III	TCNNGA	2 cut(s)	12, 74
Hsp92II	CATG	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	3 cut(s)	45, 66, 107
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	3 cut(s)	12, 66, 140
MluCI	AATT	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	34
MseI	TTAA	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	44
NlaIII	CATG	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	8
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	17
SchI	GAGTC	1 cut(s)	34
SetI	ASST	3 cut(s)	34, 71, 82
SfaNI	GCATC	1 cut(s)	30
SgeI	CNNG	7 cut(s)	24, 44, 57, 78, 86, 93, 134
Sse9I	AATT	1 cut(s)	84
SspMI	CTAG	3 cut(s)	12, 66, 140
StyI	CCWWGG	1 cut(s)	44
TaqI	TCGA	1 cut(s)	50
TasI	AATT	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	84
XbaI	TCTAGA	1 cut(s)	11
XspI	CTAG	3 cut(s)	12, 66, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.