RchiOBHm_Chr1g0339491

synthase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
30912067 .. 30916241
4175 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 426 bp
ATGAAAATCCATGTCGATGGTTACATAAAAGAAGCCAGATGGTTACACTCGAAGTACACCCCGACTCTTGATGAATATATGCCAGTAGCACTTTCTACATCCTTGTATATGCTGTCAATCACATCCTCTGTTGTTATGGGACTTACTGCTACAAAAGACTCCTTGGATTGGTTACTCACTGACCCTAACATAGTAAACGCTGCATTAGTAGTTGGCAGACTCTTAAATGACATTATGTCCCGTCAGGTTATAAACAAAGCATGCCTCCACCCTACCCGAATCCCATTGCCGGTTCTAATGCGACCTCTCAACCATGCACGTTTGTGTGAAGTTATCTACAAGTATGAAGATGCCTTTACAAACACTGGGGATGAGCTCAATGATTTTGTGACTTCTCGGCTTATCGAACTTGTTCCTACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

141

Amino Acids

15.92

Weight (kDa)

6.04

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_syn_C_2 PF19086 1 - 80 3e-16 Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C PF03936 2 - 82 5e-20 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 2 cut(s) 168, 289
AhdI GACNNNNNGTC 1 cut(s) 235
AleI CACNNNNGTG 1 cut(s) 322
AluBI AGCT 1 cut(s) 376
AluI AGCT 1 cut(s) 376
Alw21I GWGCWC 1 cut(s) 378
ApeKI GCWGC 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 411
BanII GRGCYC 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 1 cut(s) 187
BccI CCATC 2 cut(s) 11, 33
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
BmeRI GACNNNNNGTC 1 cut(s) 235
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 1 cut(s) 340
BmuI ACTGGG 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 289
Bse118I RCCGGY 1 cut(s) 289
Bse1I ACTGG 2 cut(s) 83, 370
Bse3DI GCAATG 1 cut(s) 284
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 3 cut(s) 98, 122, 376
BseLI CCNNNNNNNGG 2 cut(s) 168, 289
BseMI GCAATG 1 cut(s) 284
BseNI ACTGG 2 cut(s) 83, 370
BseXI GCAGC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 378
BsiSI CCGG 1 cut(s) 290
BslFI GGGAC 2 cut(s) 153, 223
BslI CCNNNNNNNGG 2 cut(s) 168, 289
BsmFI GGGAC 2 cut(s) 153, 223
Bsp1286I GDGCHC 1 cut(s) 378
BsrDI GCAATG 1 cut(s) 284
BsrFI RCCGGY 1 cut(s) 289
BsrI ACTGG 2 cut(s) 83, 370
BssAI RCCGGY 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 262
BstF5I GGATG 3 cut(s) 98, 122, 376
BstNSI RCATGY 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 17
BtsCI GGATG 3 cut(s) 98, 122, 376
BtsIMutI CAGTG 2 cut(s) 177, 363
Cac8I GCNNGC 1 cut(s) 262
Cfr10I RCCGGY 1 cut(s) 289
Csp6I GTAC 1 cut(s) 55
CviAII CATG 3 cut(s) 11, 261, 314
CviJI RGCY 3 cut(s) 35, 376, 400
CviKI_1 RGCY 3 cut(s) 35, 376, 400
CviQI GTAC 1 cut(s) 55
DriI GACNNNNNGTC 1 cut(s) 235
Eam1105I GACNNNNNGTC 1 cut(s) 235
Ecl136II GAGCTC 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 378
Eco53kI GAGCTC 1 cut(s) 376
EcoICRI GAGCTC 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 3 cut(s) 14, 264, 317
FaqI GGGAC 2 cut(s) 153, 223
FatI CATG 3 cut(s) 10, 260, 313
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 3 cut(s) 85, 109, 383
FriOI GRGCYC 1 cut(s) 378
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
HapII CCGG 1 cut(s) 290
Hin1II CATG 3 cut(s) 14, 264, 317
HinfI GANTC 4 cut(s) 64, 158, 219, 279
HpaII CCGG 1 cut(s) 290
Hpy166II GTNNAC 2 cut(s) 57, 196
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 2 cut(s) 57, 196
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 3 cut(s) 203, 317, 422
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 3 cut(s) 14, 264, 317
LpnPI CCDG 5 cut(s) 49, 96, 230, 303, 351
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 340
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 4 cut(s) 20, 42, 171, 388
MboII GAAGA 1 cut(s) 359
MhlI GDGCHC 1 cut(s) 378
MlyI GAGTC 3 cut(s) 58, 152, 213
MnlI CCTC 3 cut(s) 136, 275, 315
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 1 cut(s) 224
MslI CAYNNNNRTG 2 cut(s) 15, 322
MspI CCGG 1 cut(s) 290
NlaIII CATG 3 cut(s) 14, 264, 317
NmeAIII GCCGAG 1 cut(s) 376
NmuCI GTSAC 1 cut(s) 388
NspI RCATGY 1 cut(s) 264
OliI CACNNNNGTG 1 cut(s) 322
PaeI GCATGC 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 1 cut(s) 279
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 3 cut(s) 58, 152, 213
PpsI GAGTC 3 cut(s) 58, 152, 213
PsiI TTATAA 1 cut(s) 251
Psp124BI GAGCTC 1 cut(s) 378
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 2 cut(s) 15, 322
SacI GAGCTC 1 cut(s) 378
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 1 cut(s) 201
SchI GAGTC 3 cut(s) 58, 152, 213
SduI GDGCHC 1 cut(s) 378
SetI ASST 4 cut(s) 249, 307, 322, 378
SfaNI GCATC 1 cut(s) 340
SmiMI CAYNNNNRTG 2 cut(s) 15, 322
SphI GCATGC 1 cut(s) 264
SstI GAGCTC 1 cut(s) 378
StyI CCWWGG 1 cut(s) 162
TaiI ACGT 1 cut(s) 322
TaqI TCGA 3 cut(s) 15, 50, 405
TatI WGTACW 1 cut(s) 54
TfiI GAWTC 1 cut(s) 279
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TscAI CASTG 2 cut(s) 184, 370
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 3 cut(s) 17, 87, 360
TspRI CASTG 2 cut(s) 184, 370
XceI RCATGY 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.