RchiOBHm_Chr1g0340291

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0022633
Physical Location & Seq
Reverse (-)
31911285 .. 31911704
420 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
ATGCAACTTCACCACATTTCATCAGCTGCAAACGTTGCAGATATCTTCACTAAGAGTCTTCCTAAACATCAGTTCTTTGATCTCAGTTCCAAGCTGATTGTGCGCATCCCGCTCATTAGCTTGCGGGGGTGTAATAACACTATAATCTCACATCAAGATGATCACCACAGCAGCCTCAGCAATGAGGATGCACATAGGCAATCCTTACCCAAAGGAACTATCTGGAATTATTCCCCACAAGAGGAGACAACTCGTGCACTGTCTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2

Protein Analysis

89

Amino Acids

10.06

Weight (kDa)

6.64

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022633)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0340291 RchiOBHm_Chr2g0129171 RchiOBHm_Chr3g0462641 RchiOBHm_Chr6g0283831

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 112
AciI CCGC 2 cut(s) 110, 124
AclI AACGTT 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 241
AluBI AGCT 3 cut(s) 26, 94, 120
AluI AGCT 3 cut(s) 26, 94, 120
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 239
Alw44I GTGCAC 1 cut(s) 255
ApaLI GTGCAC 1 cut(s) 255
ApeKI GCWGC 2 cut(s) 26, 171
AspLEI GCGC 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 155
BaeGI GKGCMC 1 cut(s) 259
BauI CACGAG 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 259
BbvCI CCTCAGC 1 cut(s) 176
BbvI GCAGC 2 cut(s) 13, 183
BclI TGATCA 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 239
BisI GCNGC 2 cut(s) 27, 172
BlsI GCNGC 2 cut(s) 28, 173
BmsI GCATC 2 cut(s) 114, 178
BpiI GAAGAC 1 cut(s) 50
Bpu10I CCTNAGC 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse3DI GCAATG 1 cut(s) 187
BseGI GGATG 2 cut(s) 105, 193
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 1 cut(s) 187
BseMII CTCAG 2 cut(s) 97, 190
BseRI GAGGAG 1 cut(s) 257
BseSI GKGCMC 1 cut(s) 259
BseXI GCAGC 2 cut(s) 13, 183
BsiHKAI GWGCWC 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 2 cut(s) 79, 160
BspACI CCGC 2 cut(s) 110, 124
BspCNI CTCAG 2 cut(s) 96, 189
BsrBI CCGCTC 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 187
BssMI GATC 2 cut(s) 79, 160
BssSI CACGAG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 261
BstAPI GCANNNNNTGC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 3 cut(s) 51, 83, 176
BstF5I GGATG 2 cut(s) 105, 193
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 2 cut(s) 82, 163
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 2 cut(s) 79, 160
BstMWI GCNNNNNNNGC 4 cut(s) 35, 100, 109, 177
BstSLI GKGCMC 1 cut(s) 259
BstV1I GCAGC 2 cut(s) 13, 183
BstV2I GAAGAC 1 cut(s) 50
BtsCI GGATG 2 cut(s) 105, 193
BtsIMutI CAGTG 1 cut(s) 257
Cac8I GCNNGC 1 cut(s) 122
CfoI GCGC 1 cut(s) 105
CviJI RGCY 4 cut(s) 26, 94, 120, 174
CviKI_1 RGCY 4 cut(s) 26, 94, 120, 174
DdeI CTNAG 3 cut(s) 51, 83, 176
DpnI GATC 2 cut(s) 81, 162
DpnII GATC 2 cut(s) 79, 160
Eco32I GATATC 1 cut(s) 43
EcoRV GATATC 1 cut(s) 43
FaiI YATR 2 cut(s) 143, 195
FauI CCCGC 2 cut(s) 117, 117
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 27, 172
FokI GGATG 2 cut(s) 92, 200
Fsp4HI GCNGC 2 cut(s) 27, 172
FspAI RTGCGCAY 1 cut(s) 104
FspI TGCGCA 1 cut(s) 104
GlaI GCGC 1 cut(s) 104
GluI GCNGC 2 cut(s) 27, 172
HhaI GCGC 1 cut(s) 105
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 1 cut(s) 55
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 257
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 2 cut(s) 155, 223
Hpy8I GTNNAC 1 cut(s) 257
HpyCH4III ACNGT 1 cut(s) 261
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 5 cut(s) 4, 29, 38, 191, 257
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 100, 109, 177
HpyF3I CTNAG 3 cut(s) 51, 83, 176
HpySE526I ACGT 1 cut(s) 33
HspAI GCGC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 2 cut(s) 79, 160
LpnPI CCDG 1 cut(s) 208
Lsp1109I GCAGC 2 cut(s) 13, 183
LweI GCATC 2 cut(s) 114, 178
MaeII ACGT 1 cut(s) 33
MalI GATC 2 cut(s) 81, 162
MbiI CCGCTC 1 cut(s) 112
MboI GATC 2 cut(s) 79, 160
MboII GAAGA 2 cut(s) 37, 50
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 1 cut(s) 226
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 3 cut(s) 178, 185, 235
MslI CAYNNNNRTG 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 26
MwoI GCNNNNNNNGC 4 cut(s) 35, 100, 109, 177
NdeII GATC 2 cut(s) 79, 160
NsbI TGCGCA 1 cut(s) 104
PkrI GCNGC 2 cut(s) 28, 173
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
Psp1406I AACGTT 1 cut(s) 33
PvuII CAGCTG 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 156
SatI GCNGC 2 cut(s) 27, 172
Sau3AI GATC 2 cut(s) 79, 160
SchI GAGTC 1 cut(s) 64
SduI GDGCHC 1 cut(s) 259
SetI ASST 4 cut(s) 28, 36, 96, 122
SfaNI GCATC 2 cut(s) 114, 178
SgeI CNNG 9 cut(s) 103, 121, 133, 137, 167, 235, 251, 264, 266
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 1 cut(s) 226
SsiI CCGC 2 cut(s) 110, 124
TaaI ACNGT 1 cut(s) 261
TaiI ACGT 1 cut(s) 36
TasI AATT 1 cut(s) 226
TscAI CASTG 1 cut(s) 264
TseI GCWGC 2 cut(s) 26, 171
TspDTI ATGAA 1 cut(s) 9
TspRI CASTG 1 cut(s) 264
VneI GTGCAC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.