RchiOBHm_Chr1g0340861

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0029619
Physical Location & Seq
Reverse (-)
32424958 .. 32425802
845 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 387 bp
ATGCTGCAAAAAAGGCAAGCTCTACACCACTTACAAGTGCTCGCCTCCGGGTCCAAGCGTACAAAAGCAACCTTGATTATCAACAGGTTGGAGAAAGGTGGTGATGGTGGTGGACCGTCTGAATGTGAAAACAAATTCCACTCGGATAACACGGCGGTCGTGGCATTGTCCACCGGGTGGTTCAACAATAGGAAGAGTTGTCCACACTACTTTACCATACATGGTAATGGAAGGAGTGTGAAAGCCAAGGCTGTTGATGAGAATGACTCCACAATGGGTTGTGATCCTGTTCATGATTGCCAGCCTCCATGCTCTCACAACATCGTTGATGCCTCTCCAGCTGTTTGGAAGGCCTTGGGAGTTGAGGAAAGCGACTGCATGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.82

Weight (kDa)

7.03

Isoelectric Point (pI)

60.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 20 - 125 1.3e-36 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029619)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0340861
rosa_rugosa Rorug01G0161100.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 177
AciI CCGC 1 cut(s) 155
AclWI GGATC 1 cut(s) 278
AcsI RAATTY 1 cut(s) 134
AdeI CACNNNGTG 1 cut(s) 177
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 1 cut(s) 184
AluBI AGCT 2 cut(s) 20, 341
AluI AGCT 2 cut(s) 20, 341
Alw21I GWGCWC 1 cut(s) 42
AlwI GGATC 1 cut(s) 278
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 51, 113
AsuC2I CCSGG 2 cut(s) 49, 175
AsuHPI GGTGA 1 cut(s) 113
AvaII GGWCC 2 cut(s) 51, 113
Bbv12I GWGCWC 1 cut(s) 42
BccI CCATC 1 cut(s) 98
BceAI ACGGC 1 cut(s) 168
BcnI CCSGG 2 cut(s) 49, 175
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 2 cut(s) 49, 175
Bme18I GGWCC 2 cut(s) 51, 113
BmgT120I GGNCC 2 cut(s) 51, 113
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 2 cut(s) 49, 175
BmsI GCATC 1 cut(s) 319
BplI GAGNNNNNCTC 2 cut(s) 251, 283
BpmI CTGGAG 1 cut(s) 321
BpuMI CCSGG 2 cut(s) 49, 175
BsaJI CCNNGG 2 cut(s) 246, 354
Bsc4I CCNNNNNNNGG 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 246, 354
BseLI CCNNNNNNNGG 1 cut(s) 177
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 353
BsiEI CGRYCG 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 2 cut(s) 48, 174
BslI CCNNNNNNNGG 1 cut(s) 177
BsnI GGCC 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 283
BspACI CCGC 1 cut(s) 155
BspANI GGCC 1 cut(s) 353
BspHI TCATGA 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 52
BspPI GGATC 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 246, 354
BssMI GATC 1 cut(s) 283
BssT1I CCWWGG 2 cut(s) 246, 354
Bst4CI ACNGT 1 cut(s) 117
Bst6I CTCTTC 1 cut(s) 188
BstC8I GCNNGC 3 cut(s) 18, 42, 302
BstKTI GATC 1 cut(s) 286
BstMBI GATC 1 cut(s) 283
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 3 cut(s) 13, 161, 338
BstSCI CCNGG 2 cut(s) 47, 173
BstXI CCANNNNNNTGG 1 cut(s) 345
BsuRI GGCC 1 cut(s) 353
Cac8I GCNNGC 3 cut(s) 18, 42, 302
CciI TCATGA 1 cut(s) 292
Cfr13I GGNCC 2 cut(s) 51, 113
Csp6I GTAC 1 cut(s) 60
CviAII CATG 4 cut(s) 221, 293, 309, 379
CviJI RGCY 6 cut(s) 20, 245, 251, 304, 341, 353
CviKI_1 RGCY 6 cut(s) 20, 245, 251, 304, 341, 353
CviQI GTAC 1 cut(s) 60
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
DraIII CACNNNGTG 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco130I CCWWGG 2 cut(s) 246, 354
Eco147I AGGCCT 1 cut(s) 353
Eco47I GGWCC 2 cut(s) 51, 113
EcoT14I CCWWGG 2 cut(s) 246, 354
ErhI CCWWGG 2 cut(s) 246, 354
FaeI CATG 4 cut(s) 224, 296, 312, 382
FaiI YATR 5 cut(s) 218, 222, 294, 310, 380
FatI CATG 4 cut(s) 220, 292, 308, 378
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 321
HaeIII GGCC 1 cut(s) 353
HapII CCGG 2 cut(s) 48, 174
Hin1II CATG 4 cut(s) 224, 296, 312, 382
HinfI GANTC 1 cut(s) 266
HpaII CCGG 2 cut(s) 48, 174
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 3 cut(s) 113, 171, 203
Hpy188I TCNGA 2 cut(s) 121, 145
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 3 cut(s) 113, 171, 203
HpyAV CCTTC 2 cut(s) 225, 343
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 7, 378
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 161, 338
Hsp92II CATG 4 cut(s) 224, 296, 312, 382
Kzo9I GATC 1 cut(s) 283
LpnPI CCDG 6 cut(s) 61, 70, 187, 300, 314, 351
LweI GCATC 1 cut(s) 319
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 1 cut(s) 134
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 4 cut(s) 55, 315, 343, 358
MslI CAYNNNNRTG 1 cut(s) 225
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 2 cut(s) 48, 174
MspR9I CCNGG 2 cut(s) 49, 175
MwoI GCNNNNNNNGC 3 cut(s) 13, 161, 338
NciI CCSGG 2 cut(s) 49, 175
NdeII GATC 1 cut(s) 283
NlaIII CATG 4 cut(s) 224, 296, 312, 382
NlaIV GGNNCC 1 cut(s) 52
PagI TCATGA 1 cut(s) 292
PceI AGGCCT 1 cut(s) 353
PflMI CCANNNNNTGG 1 cut(s) 177
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 2 cut(s) 51, 113
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
RseI CAYNNNNRTG 1 cut(s) 225
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 2 cut(s) 51, 113
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 2 cut(s) 49, 175
SduI GDGCHC 1 cut(s) 42
SetI ASST 5 cut(s) 22, 74, 89, 100, 343
SfaNI GCATC 1 cut(s) 319
SinI GGWCC 2 cut(s) 51, 113
SmiMI CAYNNNNRTG 1 cut(s) 225
Sse9I AATT 1 cut(s) 134
SseBI AGGCCT 1 cut(s) 353
SsiI CCGC 1 cut(s) 155
StuI AGGCCT 1 cut(s) 353
StyD4I CCNGG 2 cut(s) 47, 173
StyI CCWWGG 2 cut(s) 246, 354
TaaI ACNGT 1 cut(s) 117
TasI AATT 1 cut(s) 134
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 281
Van91I CCANNNNNTGG 1 cut(s) 177
VpaK11BI GGWCC 2 cut(s) 51, 113
XapI RAATTY 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.